Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g11478 | ATGGAGGGGATAGGTCCCAATTCATGTGCAAGGCCAGTTTTAGAGAAGAAAACAAGGCCACAAGAGCAACTGAACTGTCCAAGGTGCAATTCAACCAACACCAAATTCTGTTATTACAACAACTATAGCCTCACACAACCAAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACAGAAGGTGGCTCTCTGAGAAATGTCCCAGTTGGAGGTGGTTCTAGAAAGAACAAGAAGGTCACCTCTGCCACAGCAGCTTCATCAAAAGTTCCAGACCTAAACCCACCAACCCTTTCATCACCTGTTTCTTCTCATCAAAACCCTAAAATGCATGGAGGCCAGGATCTTAATCTGGCTTTCCCAGCTATGGACAAGTATCATAGCAGCATGTCAAACCCTTATGTTGAGATGCACAATGGTGATACCAGTCACCAGAGCTCTTCTTCTGTTCCAACTTCTCTGTCTGCTCTGGAGCTATTAAGGTCTAGCATGGCATCTAGGGGCTTGAACCCTTATGCTCCTAATAATTCTTCCTTGATGGCAAACACTAATGGCCTTTACCCATCTGGCTTTCCCATGCAAGAAGTTAAACCAAGTATTGGCTTTTCAGTTGATGGGATTGGAAACAGATCATATGATCAGGTCCAAGAGAGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGATGTCAAGCAGCTTTCTGCAGGTAGTGCTGAAGTGGAACACAATAAAGAACAAGGAAATTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGTCATGGTAA | 786 | 0.444 | MEGIGPNSCARPVLEKKTRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSATAASSKVPDLNPPTLSSPVSSHQNPKMHGGQDLNLAFPAMDKYHSSMSNPYVEMHNGDTSHQSSSSVPTSLSALELLRSSMASRGLNPYAPNNSSLMANTNGLYPSGFPMQEVKPSIGFSVDGIGNRSYDQVQESGGGRLLFPFGDVKQLSAGSAEVEHNKEQGNSTGYWTGMIGEGSW. | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g11478 | 261 | MobiDBLite | consensus disorder prediction | 76 | 110 | - | - | |
Seca4g11478 | 261 | MobiDBLite | consensus disorder prediction | 65 | 111 | - | - | |
Seca4g11478 | 261 | ProSitePatterns | Zinc finger Dof-type signature. | 26 | 62 | IPR003851 | GO:0003677|GO:0006355 | |
Seca4g11478 | 261 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 16 | 154 | IPR045174 | GO:0003700|GO:0006355 | |
Seca4g11478 | 261 | Pfam | Dof domain, zinc finger | 22 | 78 | IPR003851 | GO:0003677|GO:0006355 | |
Seca4g11478 | 261 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Seca4g11478 | 261 | ProSiteProfiles | Zinc finger Dof-type profile. | 24 | 78 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g11478 | Seca-Chr4 | 254096883 | 254097668 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g11478 | 16 | 261 | C2C2-Dof Transcription Factor Family | AT3G61850 | 49.455 | 8.87e-67 | 208 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Seca4g11478 | zf-Dof | 2.8e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g11478 | - | - | gmx:778110 | 406.371 |