Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10542 ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAACAACAGTATTTTCAGCAACCAAATCACCACCAACAAGGAAACACAGGTTCCACTTCTCAGCAGCTGCTTCCACCACCACCACCACCACCACCACCTCCACCGCCACCACAGCCTCATGGAACCGCCGGCTCCATCAGGCCAGGATCAATGGCAGATAGGGCAAGGATGGCAAACTTACCTATGCCAGAAACTGCACTGAAATGTCCACGCTGTGAATCAACCAACACAAAATTCTGCTATTTCAACAACTACAGCCTCTCTCAGCCACGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACAAGAGGCGGCGCTCTCAGAAACGTCCCAGTCGGCGGTGGTTGCCGGAGGAACAAGAGAAGCAAAGGAGGAAGCAGCAACAGCACAAAGTCACCAGCAAGCTCAGACAGGCAAACAGGAAGTGCTAGTTCAACTAACTCAGTTTCTTCAAACAGTGGTTCTGCTGATCATATAATTGGCCTTAATCCTCAGATGCCACCACTTAGGTTCATGGCTCCTTTGCATCAACTCACTGATTTTGGAGATATGGGATTAAACTATGGCCTCAGTTATAACCCAATGGGAGGAGTAGGAGACTTGAGTTTTCAAATTGGAAGTGCTTTAGGTGGTGGAAATAATGTTAATGTTAATGTTGGTGTTGGTGGTGGTTCTATTTTATCTGGTGCTGGTTTGGAACAATGGAGAATGCCACAAACACAGCAGTTTCCATTTTTGGGTGGTTTGGAAGGTTCAGCTGCTGGTTTGTACCCTTTTGATCAAAGTGGTGCTCATGAGGTAACTGGATATGGTGTTGGAGGTGGGGTGAGTCATGTGAGGCCAAAGGGTAATTCTTGTTCTTCTACTTCTGGAGTGATAACTCAACTTGCTGCAGTGAAAATGGAAGATAGTGTTAGGGAGCTTAATTTGTCAAGCCAGTTCTTGGGAAGCAATAATAATATTAATATTCCAGCAAGTGAACAATATTGGAGTACTAGTGGTGCTGGTACTAATTCTGCAGCTTGGACTGATATTTCTGGTTTTAGTTCCTCTTCTACTACTAGTAACCACATGTAG 1125 0.4569 MVFTSIPAAYLDAANWQQQYFQQPNHHQQGNTGSTSQQLLPPPPPPPPPPPPPQPHGTAGSIRPGSMADRARMANLPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSNSTKSPASSDRQTGSASSTNSVSSNSGSADHIIGLNPQMPPLRFMAPLHQLTDFGDMGLNYGLSYNPMGGVGDLSFQIGSALGGGNNVNVNVGVGGGSILSGAGLEQWRMPQTQQFPFLGGLEGSAAGLYPFDQSGAHEVTGYGVGGGVSHVRPKGNSCSSTSGVITQLAAVKMEDSVRELNLSSQFLGSNNNINIPASEQYWSTSGAGTNSAAWTDISGFSSSSTTSNHM. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10542 374 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Seca4g10542 374 MobiDBLite consensus disorder prediction 137 175 - -
Seca4g10542 374 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Seca4g10542 374 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 179 IPR045174 GO:0003700|GO:0006355
Seca4g10542 374 MobiDBLite consensus disorder prediction 124 176 - -
Seca4g10542 374 SUPERFAMILY Formin homology 2 domain (FH2 domain) 43 52 - -
Seca4g10542 374 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677|GO:0006355
Seca4g10542 374 MobiDBLite consensus disorder prediction 24 65 - -
Seca4g10542 374 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10542 Seca-Chr4 241434886 241436483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10542 1 350 C2C2-Dof Transcription Factor Family AT5G02460 38.287 1.12e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g10542 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10542 - - pvu:PHAVU_010G013500g 413.69