Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09893 ATGCCAGGGAAACCTGAAACTGATGATTGGCGAGTACAGCGTAGTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCATCAGTCTTGGTGGCGTGGAGTGAGGGAAATTGAGAATGCCTCCAAATCATCTTCATCTGATCAGCTAAACGGTTCAATCATGAATGGTGTCACACATTCAGAGGTCAATGAAGGGCTGGCTGGTGGAATTAATTTCAATAAACAAAGGCAGCCTATGGTTTCTCCTTCACTGTCTGTAACTGATAAGTCAGGTAGGGATGTTGTCAAAGAGCACCAAAACATCAAACATGCCCTGTCCTCAACCCCATTTACCATGGCCAAACACCTTAGTCCAAATTCCCAGATGGAACTTGTTGGTCATTCAATTGTCCTAACTTCGCCTTATTCAGATGCACAGTATGGTCGAATCTTAGCTACTTATGGTCAACAAGCTATGATAAACCCTCAGTTGTATGGAATGCATCATGCTAGAATTCTTTTGCCACTTGAAATGGAAGAGGAACCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGTGCGAAGGCTGAGCTTGAAAAGAAAGGAATTAAAGTTAGAAAGGTATGA 627 0.4226 MPGKPETDDWRVQRSEQIQFQSSIYSHQSWWRGVREIENASKSSSSDQLNGSIMNGVTHSEVNEGLAGGINFNKQRQPMVSPSLSVTDKSGRDVVKEHQNIKHALSSTPFTMAKHLSPNSQMELVGHSIVLTSPYSDAQYGRILATYGQQAMINPQLYGMHHARILLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKGIKVRKV. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09893 208 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Seca4g09893 208 ProSiteProfiles NF-YA/HAP2 family profile. 172 208 IPR001289 GO:0003700|GO:0006355
Seca4g09893 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 45 207 IPR001289 GO:0003700|GO:0006355
Seca4g09893 208 Gene3D - 172 208 - -
Seca4g09893 208 SMART cbf3 171 208 IPR001289 GO:0003700|GO:0006355
Seca4g09893 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 206 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09893 Seca-Chr4 231625296 231629681 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca4g09893 CBFB_NFYA 3.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09893 4 231625296 231629681 Seca4g09893 4 231625296 231629681 ECH