Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g09888 | ATGTACATCAAGGAGGTTTGCTTGGAAGGTTTCAAATCGTACGCGACCCGAACCGTCGTTCCTGGTTTCGATCCCTTCTTCAACGCCATCACCGGCTTGAACGGTTCCGGAAAATCGAACATTCTCGATTCGATTTGCTTCGTCCTCGGCATCACGAACTTGCAGCAGGTTCGGGCTTCCAATCTTCAGGAACTCGTGTACAAGCAAGGCCAAGCTGGAATTACTAAGGCCACTGTGTCGATTGTGTTCGATAATTCGGATAGGAGTCGAAGCCCTCTTGGATATGAAGACCATTCAGAGATTACAGTAACAAGACAGATTGTGGTTGGAGGGAGGAACAAATATTTAATCAATGGGAAACTTGCACAGCCTAGTCAGGTCCAAAACCTTTTCCATTCGGTGCAGCTAAATGTTAACAATCCACATTTCCTCATAATGCAAGGGCGCATCACGAAGGTTTTAAATATGAAACCACCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACAAAGAAAGAGGCTGCTCTAAAAACACTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTAACAAACTTCTTGATCAGGAGATACTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAGGACACAGTACATGCAATGGGCTAATGGCAATGCTGAGTTAGATAGATTGAGAAGATTTTGTATTGCTTATGAGTATGTTCAAGCGGAGAGGATTAAAGAAAATGCTATTTCTGAGGTGGAACAAGTAAAAGCCAAGATAACTGAGATTGATGATAAAGCTAAGTCAACAATGGTGGAGGTAAAGGAAATGGAGACCAAAATAGCTCAGTTGACTGCTGAAAAGGAAGCAAGCATGGGTGGAGAAGCAAAATCTCTGTCAGAGAAGGTAGATGCACTGTCCCAGAATCTTGTGAAGGAAACATCTATACTGAACAATAAAGAAGACACTCTGAGGAGTGAAGAAGCCAACAAAAAAAAAATTGTTAAAAATATTGAAGAATTGAAGCAATCTGTAGAAGAGAAGGCCTCTGCTGTTAAAAGGGCTGAAGAGGGAGCAGCTGATCTGAAAAATAGAGTTGATGAGCTCACAAAGAGTTTGGAGGAGCATGAAAAGGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGCGGTGATGAGGAAAAATGCTTAGAGGATCAACTAGGTGATGCAAAGATAGCTGTGGGGAACGCTGAAACAGAATTGAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACAAATCAATTAAGGTCAAAACGTGAGGAGGCTATAGCTGTAGAAAAGGAGCTCAACAGTAGACGAAAAGATGTGGAAAATGTGAAAATGGGATTGGAGTCTCTTCCCTATAAAGAGGGTGAGATGGAAGCTTTGCAAAAGGAGCGTGAATCTGAGATGGACTGTGTGCAAAAGTTGAAGGATGAAATACGCAATATTTCAGCATACTTGGCAAATGTTGAATTTAAATATCGTGATCCTGTCAAGAACTTTGACAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGGAAGTTGTTTAATGTTGTTGTTGACACAGAAAATACTGGAAAGCAACTATTACAGAATGGTGATCTTAGAAGAAGAGTTACAATTATACCTTTGAACAAAATACAATCCAATTTTGTTCCCTCCAGAGTTCAGCAGGCTGCTGTTAGATTGGTGGGTAAGGAAAATGCTGAAGTTGCACTTTCTTTGGTTGGTTATGATGAAGAATTGAAGAGTGCAATGGAATATGTCTTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAAGAGGTGGCATTTAATTGGGAGATTCACACCACAAGTGTTACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGAAGCCGAAAGGGTAGTGGTGATCTTTTGAGGCAACTTCATGCTTTGGCTGAGGCTGAGTCAAAACTTTCGGAGCATCAAAAAAGGTTATCAGAGATTGAGGCAAAGATCTCAAAGCTCCTTCCTCTTCAGAAAAAATTTAAAGACCTCAAAGCACAATTAGAGCTAAAGTCTTATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAACATCATAAGCTTGGAGAATTAGTGAAAAAGATTGAACAAGAGCTTGAAGAAGCAAAATCTTCAGTCAAGGAAAAGCAAACTTTATATGAGGACTGTGTCAAGACTGTTTCATCACTTGAGAAATCAATCAAAGAACATGACAATAATCGAGAGAGTAGGCTAAAAGCCTTGGAGAAAAAGATAAAGTCAATAAAATCTCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAATGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCAGTTATCCAGGAGCAAGCATCCTTGGAGAATCAATTAGCATCAATGGGAACACAGATTAGTAATCTGACCTCAGAAGTAGAAGAACAAAGATCCACGGTTGCTGCTGGGAGGAATAATCTTGATCAAGTTCAGTCACAGCTAAATTCAGTTCGCCAGAAAATGAAGGAATGTGACAAGGAAATCAGTGGTATTATTAAACAGCAGCAAAAGCTTGAACATAAACTTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGGATGGAGATGGAACAGCAAGACTGTTCTGTGAGGGTGGATAAATTAATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGATGTTTGGTAGAAGTGGGACCGATTATGATTTTTCTTCCCGTGATCCTGGTAAAGCAAAAGAAGAACTTGAGAACCTTCAGGCTGAGCAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGATGAGTACAATGATTTAATGTCAAAGAAAAACATAATTGAGAATGACAAGTCTAAAATAAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAATGACTTTGGATCCATCTTTTCTACTCTGTTACCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGCTTTCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCTTGGATGAGGTTGATGCAGCTCTTGATTTGAGCCATACACAAAACATAGGGAGAATGATCAAGGCTCACTTTCCACACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTAGATGGTGTTTCAACCGTTCAGCGAACAGTTGCAGCCAAACAAAACAAGTGA | 3531 | 0.4053 | MYIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAERIKENAISEVEQVKAKITEIDDKAKSTMVEVKEMETKIAQLTAEKEASMGGEAKSLSEKVDALSQNLVKETSILNNKEDTLRSEEANKKKIVKNIEELKQSVEEKASAVKRAEEGAADLKNRVDELTKSLEEHEKEYQGVLAGKSSGDEEKCLEDQLGDAKIAVGNAETELKQLKTKISHCEKELKEKTNQLRSKREEAIAVEKELNSRRKDVENVKMGLESLPYKEGEMEALQKERESEMDCVQKLKDEIRNISAYLANVEFKYRDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSNFVPSRVQQAAVRLVGKENAEVALSLVGYDEELKSAMEYVFGSTFVCKTIDAAKEVAFNWEIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHALAEAESKLSEHQKRLSEIEAKISKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSSVKEKQTLYEDCVKTVSSLEKSIKEHDNNRESRLKALEKKIKSIKSQMQSSLKDLKGHDNEKERLVMEMEAVIQEQASLENQLASMGTQISNLTSEVEEQRSTVAAGRNNLDQVQSQLNSVRQKMKECDKEISGIIKQQQKLEHKLSESNLERKRMENEVKRMEMEQQDCSVRVDKLIEKHAWIASEKQMFGRSGTDYDFSSRDPGKAKEELENLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNK. | 1177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g09888 | 1176 | Coils | Coil | 736 | 763 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 400 | 448 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 178 | 198 | - | - | |
| Seca4g09888 | 1176 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 1157 | IPR027417 | - | |
| Seca4g09888 | 1176 | Coils | Coil | 982 | 1026 | - | - | |
| Seca4g09888 | 1176 | SMART | SMC_hinge_2 | 518 | 638 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Seca4g09888 | 1176 | Coils | Coil | 789 | 837 | - | - | |
| Seca4g09888 | 1176 | Gene3D | - | 590 | 666 | - | - | |
| Seca4g09888 | 1176 | Gene3D | - | 426 | 589 | - | - | |
| Seca4g09888 | 1176 | FunFam | Structural maintenance of chromosomes 2 | 1 | 202 | - | - | |
| Seca4g09888 | 1176 | FunFam | Structural maintenance of chromosomes 2 | 995 | 1174 | - | - | |
| Seca4g09888 | 1176 | Pfam | RecF/RecN/SMC N terminal domain | 2 | 1161 | IPR003395 | - | |
| Seca4g09888 | 1176 | Coils | Coil | 894 | 928 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 672 | 699 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 859 | 886 | - | - | |
| Seca4g09888 | 1176 | CDD | ABC_SMC2_euk | 1 | 156 | IPR027120 | GO:0005524|GO:0016887 | |
| Seca4g09888 | 1176 | FunFam | Structural maintenance of chromosomes 2 | 518 | 583 | - | - | |
| Seca4g09888 | 1176 | Gene3D | - | 787 | 943 | - | - | |
| Seca4g09888 | 1176 | Gene3D | - | 1 | 202 | IPR027417 | - | |
| Seca4g09888 | 1176 | PIRSF | SMC | 1 | 1156 | IPR024704 | GO:0005524|GO:0016887 | |
| Seca4g09888 | 1176 | SUPERFAMILY | Tropomyosin | 680 | 887 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 239 | 287 | - | - | |
| Seca4g09888 | 1176 | Gene3D | - | 995 | 1175 | IPR027417 | - | |
| Seca4g09888 | 1176 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 | 1 | 1174 | - | - | |
| Seca4g09888 | 1176 | Pfam | SMC proteins Flexible Hinge Domain | 518 | 638 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Seca4g09888 | 1176 | SUPERFAMILY | Tropomyosin | 295 | 496 | - | - | |
| Seca4g09888 | 1176 | Coils | Coil | 473 | 493 | - | - | |
| Seca4g09888 | 1176 | SUPERFAMILY | Smc hinge domain | 477 | 686 | IPR036277 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Seca4g09888 | 1176 | Coils | Coil | 317 | 379 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g09888 | Seca-Chr4 | 231568384 | 231584301 | Wgd |