Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09859 ATGGAGTCTCTAGTTCTGCAACTCCATGAAATCTCAGCTGTCAAATTTGGAAACTTCAAGCTCAAATCAGGCATCTCCTCACCAATCTACATAGACCTCCGCCTTGTTATATCTTACCCTTCTGTCCTCAGGCAAATTTCTCAAACTATGATTTCTTCTGTCTCCTCCACTTCATTTGACTTTGTCTGTGGTGTCCCTTACACTGCCCTGCCTATTGCCACTTGTGTGTCTGTCACTCATAACATCCCTATGGTCATGCGCCGTAAGGAAATCAAAGACTATGGCACTTCTAAAGTCATTGAAGGTGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCCACGGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAAAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATACTTAAGTTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAAGCTTGATGAGGAGATGGTACGGGTTGTTATGAGATTCTTAGAAGAAAACCAGAAGGTTGCTGCTTTGGCAACAAAAACTGTGGTCAAGGCCTTGTCATTTTTGGAGAGGGCTAGGTTGTCCAAGAATCCAACAGGAAGAAGGTTGTTTGAGATCATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGTTTGCTAAAAACTCATGTGGATATTTTTCCAGATTTCACTCCTGATTTTGGTTCTAAGCTTCGTGCGATTGCAGAGAAACATAACTTCTTAATCTTTGAAGATCGTAAATTTGCTGACATTGGTAACACAGTCACCATGCAGTATGAAGGAGGGATCTTTCATATATTGGAGTGGGCTGATATTGTAAATGCTCACATTATCTCTGGTCCTGGAATTGTGGATGGACTGAAATTGAAGGGTTTGCCTCGTGGAAGGGGTCTGTTGCTGCTCGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCAATGAAAATTGCTGAGAATCATTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCAGCATCTTGGCCTGGAGCACCCATAAATCCCTGTTTCATTCAGGCAACTCCTGGAGTTCAAATGGTGACTGGTGGGGATGATTTAGGACAGCAATATAACACTCCATATTCTGTTGTCCATGATAGGGGTAGTGACATTATCATAGTAGGCCGTGGCATTCTCAAGGCAGCAAATCCGGCTGAAGCAGCTCGTGAATACCGTCTTCAAGGATGGAGTGCGTACTTGGCCAAGCTAAACGGATGA 1410 0.4362 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSVLRQISQTMISSVSSTSFDFVCGVPYTALPIATCVSVTHNIPMVMRRKEIKDYGTSKVIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGKLDEEMVRVVMRFLEENQKVAALATKTVVKALSFLERARLSKNPTGRRLFEIMAEKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDIFPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILEWADIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTTAAMKIAENHSDFVIGFISVNPASWPGAPINPCFIQATPGVQMVTGGDDLGQQYNTPYSVVHDRGSDIIIVGRGILKAANPAEAAREYRLQGWSAYLAKLNG. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09859 469 FunFam Uridine monophosphate synthetase 1 201 - -
Seca4g09859 469 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Seca4g09859 469 Gene3D Aldolase class I 207 468 IPR013785 -
Seca4g09859 469 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Seca4g09859 469 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Seca4g09859 469 SUPERFAMILY Ribulose-phoshate binding barrel 210 464 IPR011060 -
Seca4g09859 469 NCBIfam orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Seca4g09859 469 CDD PRTases_typeI 59 166 IPR000836 -
Seca4g09859 469 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Seca4g09859 469 Pfam Phosphoribosyl transferase domain 55 152 IPR000836 -
Seca4g09859 469 CDD OMP_decarboxylase_like 238 455 - -
Seca4g09859 469 Gene3D - 1 206 IPR029057 -
Seca4g09859 469 FunFam Uridine monophosphate synthetase 207 468 - -
Seca4g09859 469 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 466 - -
Seca4g09859 469 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Seca4g09859 469 NCBIfam orotidine-5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09859 Seca-Chr4 231123953 231128169 Wgd