Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g09850 | ATGGCAGCAAGTGCAATTTTTCTTGTTGCCTGTGGGGAACCACATTTGATGCCAACACATATTGCTTTTCTAAGATTTTTTAATTGCACCATTCAGTCGATCAAGCAACACATTACTCAGGTTTTCTGCTCCCAACATGATGTCATCAAACATACAAGGATTTGCTGTGAAGAGGATATGGTGCTATCGTCTACGAAACATCTAATGTCAGCTGTTGGGAGAAAGTGCCAACTAAATACTCAAGATTGTTCATCATATGACAAGAGTTTTGGTGATGAGAAGGGCCAGCATGCTGTTTTCAATGTGTTGGATACTATGCTAAAGGATAGTTTAGAGCGTCTGAAGATGATGAGGGAAAACATATCTTTGGTAAAGATAGGTCTTCAGGGATATTGTGAACATAACTACACTGAGCATGCAGCCACCATTAAGTGTTTATGCTTGGAAGGTAAGTTGGGAGCATCTCTGTGGCTTCGGAGAAAAATGGTGCAGAAAGGTATTCTTCCTGACGTGTTTACTCACAACCATATTGTAAATGGGCTATGCAAAATTGGTCTTATGGAGAAGGCAGATTGGCTTGTTAGAGAGATGTTAGAATTTGGTCCTCATCCCAACTGTGCCACTTACAACACTTTAATTAAGGGCTATTGTGCTGTTGATGATGTAAATACAGCTTTGCATCTGTTCTCCACCATGGCCGATACTGGTATTCAGCCAAACAGGGTTACTTGTAACATACTGGTACATGCATTGTGTGAGAAAGGTCTTCTGAAGGAAGCTAAAAAGATGCTTGAAGAAATACTAAATGATGATAATGACAAAGATATGCCTGATTTAGTTACCTCTACTATATTTATGGACAATTACTTTAAGAATGGAGCAATTATTCAAGCCCTCAGTCTTTGGAATGAGATGCTTCAGAAGTGTGCAAAAGTAGATGTTGTTGCTTACAATGTTCTTATAAATGGATTTTGCAAGAGTCAACAGATGAATCTTGCATATGGATATGCATGTGAGATGCTTAAGAAAGGTTTACTTCCTGATGCTTTTACTTATAATATTCTTATTGGTGCTCTTTGCAAGGAAGGCAAATCTAGCGAAGCTTGTTATATTCTTGGAGTTATGTCTAAAATGGGAATCGTGCCAGATCAGATTTCATACAAGATTATGATTCAAGGTCTTTGTTATGATGGAGATATTGTTCGAGCAAAAGACTTGCTTCAGCATATGTTGAACAATTCAATGGTGCCCAAACCTATAGTATGGAACCTAATAATTGACTTCTATGGAAGATGTGAAGATCTCAGTAATGCATTTTTTACAAGAGATCAGATGCTAGCTTTTGGTGTTCGCCCCAATGTATTTACTTATAATGCTTTAACTCTTGCACAAGTGAAGAGTGGCAATATTTATGACGCTTACTCTCTTAAGGAAGAGATGCTTTTAAAAGGTCTTTTTCCTGATGTAGTCACCTATAATTTGTTGATAGGTGGTGCGTGTAATTTAGGACGCCTCGATTTGGCGCTACTATTACATGATGAAATGGTGCAAAGGGGGTACGAACCAGATTTAATAACTTATACTGAACTTGTTAGGGTGTTCTGTATTAGAGGTAAAATCAAAGAGGCAGAAGAGCTTTATGCTAAAATACTGAAATCTGGTTTATTGAATGATCATGTTCCAGTTCAGATTCTTTTTAATACGTACTGCAAATTGGAGGAGCCAGTAATGGCATTTAACTTTTATCAAGACTGGTTGGAAAGTAAATGGGGTAGTTATCCTGACTAA | 1788 | 0.377 | MAASAIFLVACGEPHLMPTHIAFLRFFNCTIQSIKQHITQVFCSQHDVIKHTRICCEEDMVLSSTKHLMSAVGRKCQLNTQDCSSYDKSFGDEKGQHAVFNVLDTMLKDSLERLKMMRENISLVKIGLQGYCEHNYTEHAATIKCLCLEGKLGASLWLRRKMVQKGILPDVFTHNHIVNGLCKIGLMEKADWLVREMLEFGPHPNCATYNTLIKGYCAVDDVNTALHLFSTMADTGIQPNRVTCNILVHALCEKGLLKEAKKMLEEILNDDNDKDMPDLVTSTIFMDNYFKNGAIIQALSLWNEMLQKCAKVDVVAYNVLINGFCKSQQMNLAYGYACEMLKKGLLPDAFTYNILIGALCKEGKSSEACYILGVMSKMGIVPDQISYKIMIQGLCYDGDIVRAKDLLQHMLNNSMVPKPIVWNLIIDFYGRCEDLSNAFFTRDQMLAFGVRPNVFTYNALTLAQVKSGNIYDAYSLKEEMLLKGLFPDVVTYNLLIGGACNLGRLDLALLLHDEMVQRGYEPDLITYTELVRVFCIRGKIKEAEELYAKILKSGLLNDHVPVQILFNTYCKLEEPVMAFNFYQDWLESKWGSYPD. | 596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 240 | 274 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 417 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 488 | 522 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | IPR002885 | - | |
| Seca4g09850 | 595 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 275 | 576 | - | - | |
| Seca4g09850 | 595 | Gene3D | Tetratricopeptide repeat domain | 425 | 593 | IPR011990 | GO:0005515 | |
| Seca4g09850 | 595 | Gene3D | Tetratricopeptide repeat domain | 338 | 415 | IPR011990 | GO:0005515 | |
| Seca4g09850 | 595 | Gene3D | Tetratricopeptide repeat domain | 271 | 337 | IPR011990 | GO:0005515 | |
| Seca4g09850 | 595 | Gene3D | Tetratricopeptide repeat domain | 200 | 270 | IPR011990 | GO:0005515 | |
| Seca4g09850 | 595 | Gene3D | Tetratricopeptide repeat domain | 32 | 199 | IPR011990 | GO:0005515 | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 418 | 452 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 172 | 206 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 208 | 240 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 385 | 417 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 350 | 383 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 525 | 555 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 242 | 269 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 315 | 349 | IPR002885 | - | |
| Seca4g09850 | 595 | NCBIfam | pentatricopeptide repeat | 490 | 523 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat | 165 | 197 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat | 378 | 410 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 348 | 382 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat | 421 | 450 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat | 455 | 485 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat | 280 | 308 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 453 | 487 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - | |
| Seca4g09850 | 595 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 170 | 204 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat family | 313 | 361 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat family | 487 | 535 | IPR002885 | - | |
| Seca4g09850 | 595 | Pfam | PPR repeat family | 204 | 252 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g09850 | Seca-Chr4 | 230996874 | 231006221 | Wgd |