Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09844 ATGTCTTCTTCTTTGGTTGGGCCACTCCTCCTTGCTCCACTGAATGGTTACAAGGTGTGGGAGGACCCATCTTTCATCAAGTGGAGGAAAAGGGACTCACATGTTACCTTGCATTGCCATGAATCTGTTGAAGGATCTCTTAAATACTGGTATCAACGCAGCAAAGTGGATTTTCTGGTTTCCCAGTCTGCTGTTTGGAGTGATGATGCGGTTAATGGAGCTCTTGATAGTGCTGCATTTTGGGTCAAAGACTTGCCTTTTGTTAAGTCCTTGTCTGGATATTGGAAATTTTTCATGGCTGCCAATCCCAACAGTGTCCCTACTAAATTTTACGAAAGTGAGTTCCAGGATTCAGAGTGGAACACTTTGCCTGTTCCTTCAAATTGGCAGCTACATGGATTTGACCGTCCTATATATACAAATGTCGTGTATCCATTTCCACTGGATCCTCCTTCAGTTCCTACGGAAAATCCCACTGGCTGCTACAGAATGCACTTCCATCTTCCTAAAGAATGGGAGGGTAGAAGAATTTTGTTGCATTTTGAAGCCGTTGATTCTGCCTTCTGTGCATGGATAAATGGGCATCCTATAGGATATAGCCAAGACAGCAGGCTACCTGCAGAGTTTGAAATCACTGAGTTTTGTCATCCATGTGGTTCAGACCTGAAGAATGTTCTTGCAGTTCAAGTGTTTAGATGGAGTGATGGATCTTACCTTGAAGATCAGGACCAATGGCGATTATCTGGCATCCACCGTGATGTTCTTCTTCTAGCAAAGCCAAAGGTATTTATCACTGACTATTTTTTCAAATCAAACCTCGCTGAAGATTTTTCTTATGCAGAGATACTGGTTGAAGTAAAAATAGACAACTCACAAGAAACATCCAAGGATAATGTTCTCACAAACTACACCATAGAAGCTGCACTATTTGATTCTGGAAGCTGGTACACCTCTGATGGGAATCCTGATCTTCTTTCATCTAATGTAGCAGACATAAAGTTCCAACCATCGACTGCACCATTAGGATTTCATGGTTATCTGCTTGTGGGAAAACTGCAATCACCAAAGCTTTGGTCTGCAGAGCAACCATACCTCTATACCCTAGTTGTCATCCTTAAAGATCAATCTGGCCGTGTTGTTGACTGTGAATCATGTCCAGTAGGCTTTAGGACAGTATCTAAAGCCCACAAACAGCTGCTTGTTAATGGGCATGCAGTTGTAATAAGAGGTGTGAACAGGCATGAACATCATCCACAAGTGGGGAAGGCAAACATAGAATCCTGCATGGTCAAGGACTTGGTCTTAATGAAGCAAAACAATATTAATGCAGTGAGGAATAGCCATTATCCTCAACATCCACGATGGTATGAGCTATGTGATCTGTTTGGCATGTACATGATAGATGAAGCCAATATTGAGACACATGGTTTTGATTATTCTAAACATCTCAAGCATCCTACTTTGGAACCAAGTTGGGCAACTGCAATGCTGGATCGTGTGATCGGAATGGTTGAGAGGGATAAAAATCACACATGCATTATTTCCTGGTCTTTAGGGAACGAATCTGGATTTGGACAAAATCATTTTGCTTTAGCTGGTTGGATTCGAGGAAGAGATTCAACACGGGTAATACATTATGAAGGGGGTGGGTCCAGAACTCCATGCACTGATATTGTGTGCCCCATGTATATGCGTGTTTGGGACATGGTCAAAATTGCCAATGATCCTACTGAAACACGTCCTCTGATCCTATGCGAGTATTCACATGCAATGGGAAACAGCAATGGGAACTTACACATATATTGGGAAGCAATTGACAGCACATTTGGACTTCAAGGAGGCTTTATTTGGGATTGGGTTGATCAGGCTCTGTGGAAGGTTCATGAAGATGGTCAAAAGCGTTGGGCATATGGAGGTGAATTCGGGGATATTCCTAATGACTTGAACTTTTGTTTAAATGGCCTCACATGGCCTGATCGGACTCCTCATCCTGTTTTACATGAAGTCAAGTACCTATACCAACCAATCAAGGTGACTTTAAATGAAGGAAAATTGGAGATAAAAAATACTCATTTTTTTCAAACAACAGAAGGATTGGAGTTCAGCTGGTATATTTCTGCAGATGGATACAATCTTGGATCTGGTATTTTGAGTCTTGCCCCAATAAAGCCTCAGAACAGTTATGCTGTTGATTGGCAGTCAGGTCCATGGTATTCTCTATGGGCTTCGTCATCATCAGAAGAAATGTTCCTGAGTATAACTGCCAGGCTTTTGAACTCTACACGCTGGGTTGAAGCTGGTCATGTTGTTTCAACTGCTCAAATTCAATTGCCTGCTAGGAGAGACATTGTTCCTCATACTATTAATATTTGCGGTAGCACTCTGGTAGCTGAAACATTGGGAGATACAATCAAAGTCAGCCAGCAAGATGTTTGGGACATAACATTGAACACTATAACAGGTTTAGTTGAAAGCTGGAAGGTTAAAGGAGTGCATGTTATGAATAAGGGCATACTTCCATGTTTCTGGAGAGCTCCTATTGATAATGATAAAGGGGGAGGTGCAGCTAGTTATTTGTCCAGGTGGAAAGCTGCTGGAATTGACAACCTCCACTTTATTACTGAGAGCTGTTCTGTACAGAATATCACTGAGAACTTGGTTAAAGTGTTGGTGGTTTTTCTTGGTTTTACCAAGGGTGAGGAGGAAGACAAGTCAAAGGTTTTATTTACAACAGATATGACATATACAATTTATGCCTCTGGGGATGTCATTATGGAATGCAATGTGAAACCAAACCCTGATCTTCCTCCTTTGCCACGTGTGGGAATTGAGTTTAAGGTGGAAAAATCATTGGATCAAGTAAGTTGGTATGGAAGAGGGCCATTTGAGTGTTATCCAGATCGAAAGGCTGCTGCCCAGGTTGCTGTCTATGAGAAGAATGTTAATGACTTGCATGTTCCTTATATTGTTCCTGGGGAATGTTCAGGTAGGGCAGATGTTAGATGGGCAACTTTCCTAAACAAAGATGGTTTTGGAATATATGCTTCTAAGTATGGTAACTCTCCACCCATGCAAATGAGTGCAAGCTACTATAGCACTTCAGAACTTGACCGGGCCACACACGATGAAGAGCTCATTGAAGGGGATAGCATTGAGATTCATCTTGACCACAAGCACATGGGTTTGGGTGGAGATGATAGTTGGTCCCCATGTGTCCATGACCAGTATTTGCTTCCTGCTGTGCCATACTCGTTCTCTGTTAGGTTGTGTCCAGTAACTCCAGCCACTTCTGGCCGTGACATCTATAGATCCCAGTTTCAAAGCTCTTGA 3330 0.4225 MSSSLVGPLLLAPLNGYKVWEDPSFIKWRKRDSHVTLHCHESVEGSLKYWYQRSKVDFLVSQSAVWSDDAVNGALDSAAFWVKDLPFVKSLSGYWKFFMAANPNSVPTKFYESEFQDSEWNTLPVPSNWQLHGFDRPIYTNVVYPFPLDPPSVPTENPTGCYRMHFHLPKEWEGRRILLHFEAVDSAFCAWINGHPIGYSQDSRLPAEFEITEFCHPCGSDLKNVLAVQVFRWSDGSYLEDQDQWRLSGIHRDVLLLAKPKVFITDYFFKSNLAEDFSYAEILVEVKIDNSQETSKDNVLTNYTIEAALFDSGSWYTSDGNPDLLSSNVADIKFQPSTAPLGFHGYLLVGKLQSPKLWSAEQPYLYTLVVILKDQSGRVVDCESCPVGFRTVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKANIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDYSKHLKHPTLEPSWATAMLDRVIGMVERDKNHTCIISWSLGNESGFGQNHFALAGWIRGRDSTRVIHYEGGGSRTPCTDIVCPMYMRVWDMVKIANDPTETRPLILCEYSHAMGNSNGNLHIYWEAIDSTFGLQGGFIWDWVDQALWKVHEDGQKRWAYGGEFGDIPNDLNFCLNGLTWPDRTPHPVLHEVKYLYQPIKVTLNEGKLEIKNTHFFQTTEGLEFSWYISADGYNLGSGILSLAPIKPQNSYAVDWQSGPWYSLWASSSSEEMFLSITARLLNSTRWVEAGHVVSTAQIQLPARRDIVPHTINICGSTLVAETLGDTIKVSQQDVWDITLNTITGLVESWKVKGVHVMNKGILPCFWRAPIDNDKGGGAASYLSRWKAAGIDNLHFITESCSVQNITENLVKVLVVFLGFTKGEEEDKSKVLFTTDMTYTIYASGDVIMECNVKPNPDLPPLPRVGIEFKVEKSLDQVSWYGRGPFECYPDRKAAAQVAVYEKNVNDLHVPYIVPGECSGRADVRWATFLNKDGFGIYASKYGNSPPMQMSASYYSTSELDRATHDEELIEGDSIEIHLDHKHMGLGGDDSWSPCVHDQYLLPAVPYSFSVRLCPVTPATSGRDIYRSQFQSS. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09844 1109 Pfam Glycosyl hydrolases family 2, sugar binding domain 89 260 IPR006104 GO:0004553|GO:0005975
Seca4g09844 1109 Gene3D Immunoglobulins 261 390 IPR013783 -
Seca4g09844 1109 PRINTS Glycosyl hydrolase family 2 signature 432 450 IPR006101 GO:0004553|GO:0005975
Seca4g09844 1109 PRINTS Glycosyl hydrolase family 2 signature 184 199 IPR006101 GO:0004553|GO:0005975
Seca4g09844 1109 PRINTS Glycosyl hydrolase family 2 signature 401 415 IPR006101 GO:0004553|GO:0005975
Seca4g09844 1109 PRINTS Glycosyl hydrolase family 2 signature 580 595 IPR006101 GO:0004553|GO:0005975
Seca4g09844 1109 PRINTS Glycosyl hydrolase family 2 signature 507 522 IPR006101 GO:0004553|GO:0005975
Seca4g09844 1109 Gene3D - 794 1091 IPR014718 GO:0030246
Seca4g09844 1109 FunFam Glycoside hydrolase family 2 protein 794 1091 - -
Seca4g09844 1109 SUPERFAMILY beta-Galactosidase/glucuronidase domain 262 390 IPR036156 -
Seca4g09844 1109 PANTHER BETA-GALACTOSIDASE 18 1104 - -
Seca4g09844 1109 Pfam Beta galactosidase small chain 810 1089 IPR004199 GO:0004565|GO:0005975|GO:0009341
Seca4g09844 1109 Gene3D - 13 260 - -
Seca4g09844 1109 ProSitePatterns Glycosyl hydrolases family 2 signature 1. 442 467 IPR023230 -
Seca4g09844 1109 Pfam Glycosyl hydrolases family 2 262 390 IPR006102 GO:0004553|GO:0005975
Seca4g09844 1109 SMART Bgal_small_N_2 805 1090 IPR004199 GO:0004565|GO:0005975|GO:0009341
Seca4g09844 1109 SUPERFAMILY beta-Galactosidase/glucuronidase domain 670 780 IPR036156 -
Seca4g09844 1109 SUPERFAMILY (Trans)glycosidases 395 674 IPR017853 -
Seca4g09844 1109 FunFam Beta-galactosidase 391 673 - -
Seca4g09844 1109 ProSitePatterns Glycosyl hydrolases family 2 acid/base catalyst. 507 521 IPR023232 -
Seca4g09844 1109 Gene3D Glycosidases 391 672 - -
Seca4g09844 1109 Gene3D Immunoglobulins 674 782 IPR013783 -
Seca4g09844 1109 SUPERFAMILY Galactose-binding domain-like 87 261 IPR008979 -
Seca4g09844 1109 Pfam Glycosyl hydrolases family 2, TIM barrel domain 396 677 IPR006103 GO:0004553|GO:0005975
Seca4g09844 1109 Pfam Beta-galactosidase, domain 4 685 778 IPR032312 -
Seca4g09844 1109 SUPERFAMILY Galactose mutarotase-like 801 1092 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09844 Seca-Chr4 230888627 230898449 Wgd