Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09797 ATGGCTTCTTCAGTTGGAGGCAACGGGAACTCGGGTGTCGAGTGGCACGTGCGTCCTCCGAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATTCCAGCTGGTAGAATCAAGATGGAGCTCTTCGCTGATATTACTCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACAGGGGAGTACAGGTTTTCATCTATCACTGTGCTTTTCTTAATAACCACCATACCATTACCATCTCGATACTCTGCTGTTCCTGTATGTGGATGGAAAGCAGGACTGCCTGTTGGTTACAAGGGTTGTCAATTTCACAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTCAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACACAAGTTTGATGATGAGAATTTTATTGCGAAACACACTGGGCCTGGTCTTCTATCAATGGCGAATAGCGGGGTAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTCGTTTTTGGTAGAGTGCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAACAACCGGCCAAAATTAGCTTGCGTCATCGCTGAATGCGGTGAAATGTGA 660 0.453 MASSVGGNGNSGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADITPKTAENFRQFCTGEYRFSSITVLFLITTIPLPSRYSAVPVCGWKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGVNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09797 219 CDD cyclophilin_ABH_like 25 217 - -
Seca4g09797 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 176 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 164 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 27 219 - -
Seca4g09797 219 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 28 218 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 217 IPR002130 GO:0000413|GO:0003755
Seca4g09797 219 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 101 118 IPR020892 GO:0003755|GO:0006457
Seca4g09797 219 SUPERFAMILY Cyclophilin-like 15 219 IPR029000 -
Seca4g09797 219 PIRSF Peptidylpro_ismrse 14 219 IPR024936 GO:0003755
Seca4g09797 219 Gene3D - 14 219 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09797 Seca-Chr4 230005983 230010800 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09797 4 230005983 230010800 Seca4g09797 4 230005983 230010800 ECH