Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09793 ATGGTGGTTAAACCGGGTTCGGTTCCAGACTTCGAGGCACTTAGAGAGCTGTTCAAGCCTCACATAGAGTCCTTTGATTACATGGTCAATGCAGGATTGGAAACCATGTTCAGTCACATCAAACCCGTCCAAGTTATCGACCCTTTCACATCCAGAAAGCTAAGAATTTGGGTGGATAATCCGGTGCTGTATCCGCCTCAGAAGGAACGGGCCTCGAAGACAATGAGGGAGGCCTTACTTCCATTTGAATGTAGACAGGCAAAAATTACATATGCAGGGAAGTTCACTGCAGATGTTTGCTTTCAATATGATAATGGTCCGGCTATTGTAAGAGAAACTTTGAATTTTGGACAGTTTCCCATAATGCTACAGTCAAAGCTATGCAACTTGAGAGGTGCTGATCCCCAAAAACTTGTGTCCTACAAGGAAGAAGCATCAGAAATGGGTGGTTACTTCATCTTGAATGGCCTTGAAAGAGTTATTCGACTATTAATTTTGCCAAAACGGAATTATCCAATGAGTATGGTGCGGAATTCATTCAGTGACCGGCGGGAAGGTTATACTGATAAAGCAGTTGTAATAAGGTGTGTAAGAGCTGATCAATCCTCATTAACAGTGAAATTGTACTATCTTCGTAATGGGAGCGCAAGACTTGGTTTCTGGATACAAGGAAGGGAATACTTGCTTCCTGTGGGCATTGTTTTGAAGGCTCTGATTGACACCAGTGATCGTGAAATTTATGTAAATTTGACAAGCTGCTATAATGAGAAGTATGAAAAGGGAAAGGGTGCTGTTGGAACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGATGAAGTTCGAGATTTGTCTCTTTTCACTCGCCTTCAATGTCTAGAATATATTGGAAAGCATTTACAACCATTTATGACTGGACTTGAGAATGACAGCTATCATGTTGTGGCTGAGGCTGTTCTGAAGGACTACGTATTTGTTCATCTGGATAACAATTTTGACAAGTTCAATCTGCTCATCTTCATGTTGCAGAAACTTTTCTCACTCATAGATCAGACATCAGTACCGGACAACCCTGATTCCTTACAAAATCAGGAGGTTTTACTCCCTGGCCATCTGATTACACTTTATCTTAAGGAGAAATTAGAAGATTGGCTGCAAAAGGGAAAAAAGCTTCTACTGGATGAGCTCAATAAAAAAAGCAAGACCAAGAATTTTGATTTCAGTGACATTCATCAAATTAAGAAAGTTATGGATAAAAATACACCTCAGGTCAGTGCATCGATTGAAAATATGTTGAAAACTGGAAGATTAGTTACACAAACGGGTCTGGATCTGCAGCAGAGGGCAGGCTATACAGTTCAGGCTGAAAGGCTAAACTTCTTACGTTTTCTCTCACATTTTCGTGCTGTTCATCGAGGGGCCTCATTCGCTGGACTTCGTACTACAACTGTGCGGAAGTTGTTGCCTGAATCTTGGGGTTTTCTTTGCCCTGTGCACACACCTGACGGTGAGCCCTGTGGATTGCTGAATCATATGACTTGCACTTGTAGGATTACATCGTTCTTTGATTCTCAAGGGAACATCAAAGATTATTTTAAAATTAAAATGTCTATCCTCAATATTTTAATTGAGGTTGGAATGACACAATCATTGCCAAAGCTATTTCTACCTGGCCCACCTGAAGTTCTTGCTGTTCTTTTAGATGGTTGTATTGTTGGTTGTATTCCTTCCAGTGAAGTTGAGAAAGTTGTGGCTCACATTCGAGAATTAAAAGTGTCATCTCCTGCAGTGATTCCTGATGATTTGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCATATCCTGGTCTCTACCTCTTCACATCTCCTTCAAGATTTGTTCGGCCAGTGAGAAATATATCAGTTCCTTCCAATGGAAGTGAAAACATAGAACTCATTGGGCCATTTGAACAGGTTTTTATGGAGATACGATGTCCTGATGGTGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACGCATGAGGAAATTCATCCAACAGGCATGCTTAGTGTAGTTGCTAATCTTACACCATGGTCAGATCATAATCAAAGCCCACGAAATATGTATCAGTGTCAGATGGCCAAGCAAACAATGGCGTTCTCATCACAAACAATTCAACATCGTGCAGATCAAAAGTTATATCATCTTCAGACTCCCCAGTCTCCGATTGTTCGCACAAGTTCATATACGAAATACTGCATTGATGAATATCCTACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTGGAACGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTGTGTGAACAAGGCAGTAGGTCAGACCGAACTCAAAAAATGTTCAGAAAAAGTAACCTAGAGAAATCAACTTGTCCCTCGCTTGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGGCCAGATGAACCGTATTGTAGCATTTATAATGAAGTAACAAATTCGACACGCACCTTCAAAAGAAAGGGTTCTGAACCTGTTTATGTTGACTATGTTGCTGTTGATGTAAAAAACAAAAAGCACCTTCAGAAGGTGAGCCAAATGCTTATATTACCTGGACAGGTTAACATACGGTTTCGACATCCTCGGAACCCTGTCATTGGTGATAAATTTAGCAGTAGGCACGGGCAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGACATTGATATGCCATTTTCTGGAACTACTGGGATGCGTCCAGATCTCATTATCAATCCTCATGCATTTCCTTCAAGGATGACGATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGCTTACATGGAGAATTTGTAAATGCAACTCCATTTCGGAGTTCAGTGCAGAAAGATAGTGGGGAGTCTGGACCAAAGTCAGATTCACTTGTTGATGATCTTGGTCTTATGCTAAGAGAAAAGGGATTTAATTATCACGGTTTGGAGGTTCTGTACAGTGGGGTTTATGGAACAGAACTAATGTGTGAGATATTTATTGGGCCTGTTTATTATCAGCGGCTACGTCACATGGTTTCGGACAAATTTCAGGTTCGATCTACTGGCACAATTGACCAGGTTACCCGGCAGCCAATAAAAGGGCGAAAGCGTGGTGGCGGTATACGGTTTGGAGAAATGGAACGTGACTCTCTACTTGCACATGGAGCTGCTTATCTTCTGCATGATAGATTGCACACATGTTCTGATTATCACATTGCTGATGTATGTTCCCTTTGTGGAAGCATGCTTACAACAACTTTCATCCAGCCTCAAAAGCGACCAGTGCGGGAGATTGGTGGGCTTCCACCAGGAAGAGCTCCCAAAAAGGTCACCTGTCATGCTTGCCAAACCAGTAAAGGCATGGAGACAGTTGCCATGCCCTATGTATTTAGATATTTGGCAGCAGAGTTAGCAGCAATGAACATAAAAATGACTCTTAAGCTAAGTAATGAAGCTGGCGCTTGA 3558 0.416 MVVKPGSVPDFEALRELFKPHIESFDYMVNAGLETMFSHIKPVQVIDPFTSRKLRIWVDNPVLYPPQKERASKTMREALLPFECRQAKITYAGKFTADVCFQYDNGPAIVRETLNFGQFPIMLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVIRLLILPKRNYPMSMVRNSFSDRREGYTDKAVVIRCVRADQSSLTVKLYYLRNGSARLGFWIQGREYLLPVGIVLKALIDTSDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDEVRDLSLFTRLQCLEYIGKHLQPFMTGLENDSYHVVAEAVLKDYVFVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQKGKKLLLDELNKKSKTKNFDFSDIHQIKKVMDKNTPQVSASIENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSFFDSQGNIKDYFKIKMSILNILIEVGMTQSLPKLFLPGPPEVLAVLLDGCIVGCIPSSEVEKVVAHIRELKVSSPAVIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVRNISVPSNGSENIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQSPIVRTSSYTKYCIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLCEQGSRSDRTQKMFRKSNLEKSTCPSLDSDGLPHVGQMIRPDEPYCSIYNEVTNSTRTFKRKGSEPVYVDYVAVDVKNKKHLQKVSQMLILPGQVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNATPFRSSVQKDSGESGPKSDSLVDDLGLMLREKGFNYHGLEVLYSGVYGTELMCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSNEAGA. 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09793 1185 Gene3D - 353 551 - -
Seca4g09793 1185 Gene3D - 10 170 - -
Seca4g09793 1185 Gene3D RNA polymerase Rpb2, domain 2 171 352 IPR037034 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 8 1181 - -
Seca4g09793 1185 Pfam RNA polymerase Rpb2, domain 7 1070 1178 IPR007641 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 Pfam RNA polymerase beta subunit 17 401 IPR007644 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 CDD RNA_pol_B_RPB2 17 1178 IPR015712 GO:0003899|GO:0006351|GO:0032549
Seca4g09793 1185 Pfam RNA polymerase Rpb2, domain 6 687 1068 IPR007120 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 Gene3D - 718 902 IPR014724 GO:0003899
Seca4g09793 1185 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 8 1175 IPR015712 GO:0003899|GO:0006351|GO:0032549
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 353 550 - -
Seca4g09793 1185 Pfam RNA polymerase Rpb2, domain 3 455 518 IPR007645 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 895 1054 - -
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 1055 1180 - -
Seca4g09793 1185 Pfam RNA polymerase I, Rpa2 specific domain 572 629 IPR009674 GO:0003899|GO:0005634|GO:0006351
Seca4g09793 1185 Gene3D - 688 1053 IPR037033 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 10 171 - -
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 688 787 - -
Seca4g09793 1185 Pfam RNA polymerase Rpb2, domain 2 188 366 IPR007642 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 Gene3D RNA polymerase alpha subunit dimerisation domain 1055 1181 - -
Seca4g09793 1185 ProSitePatterns RNA polymerases beta chain signature. 906 918 IPR007121 GO:0003677|GO:0003899|GO:0006351
Seca4g09793 1185 FunFam DNA-directed RNA polymerase subunit beta 172 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09793 Seca-Chr4 229926305 229953281 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09793 4 229926305 229953281 Seca4g09793 4 229926305 229953281 ECH