Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09791 ATGAGTCCTCCTGCTGCACCTAACATGGAAGAAGCTAAGACTTCGGTTGCCTCGGTCGATAATGGCGACCAAGTCGAGTCTCGGTTCGCCCAGTTTTGCCAGAATGGACTAGCATTGGATGAAAAAAGCTGTAAAGAAGCAATGAATCTCTTTGGAGAGACCAAACATCTTCTACAGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGAAGCCGAGCGGTACTGGTTTGCTTTTATTATATACTCTGTCAAGAGATTGACTCAGAGAAATGAGGAGAGTAGGACAGAAGAAACTGAGAACACCGGGCTTACCTTGTGTCGTATATTGAGAGCAGCTAAGCTGAACATTGGAGATTTTTTTAAAGAACTTCCTCCGTATGTTGTTAAGGCTGGTCCACTTATAAGTAATCTATATGGCGCAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCAAACGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCCCAATACCATCGCTTTGGATGGCTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGATTTGGTGACTTGCACCAACGGTTTAATTTCAATTTTGGCTATCTTAGTTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCTCGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATTTAATAGCAGATATATTGAAGAAGAAGCCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATGGTTTGACCTATTTTAAAGATCTAATGGAGGAATCAGCTCTGCTATCTAGTTTAAATATCTTAGAAAAAGATTATGATTACATGATTCGCAACAAGGGTGAACTGGATGAGAGGTTATTCATTAATGAAAATGACAGCCTGCTAGCTTCAGGAAGCTTGTCTGGCGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCCCACCGCTCTCCTGCATCCCATGCCAATGGCATTCCAGGTAGTGTGAGTTCAAAGATGGCAGCTACCCCTGTGAGCACAGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTCCATCAAGGCCCTCGCAAGAGCTAGAGCGATTCTTGACATCATGTGACAGGGATGTAACAAGTGATGTTGTTCACAGAGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGGGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCGGAACAGCGAAGATTAGAAGCAATAAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAGGCCCAGATACTTCATGCAACTAATTTAACCTCGCTACTAACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACGATGTTGTTCCCTGCAGTTCTCGAAAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAGTCCCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCGGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTACCTCCTGTGCCACCACTGCCTAAGCTTGAGACTTCACCAACTCAGAATGGGGATACCAGATCACCAAAGCGACTCTGTACAGAATATCGAAATGTGTTAGTGGAACGAAATTCTTTTACTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCTGTCAGAATCAGTGGCATGGTTGAAAGGCTACAATCATCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTCTATGGTGTTGCAAAGATTTCTCAAATGAACCTAACTTTTAGGGAGATCATATACAACTATAGAAAACAACCACAATGCAAACCACAAGTTTTTCGTAGCGTATTTGTTGATTGGTCATTGGCACGCTGTAATGGGGCATGTAAACAGAGAACAGGACAGGAGCATGTTGACATCATTACATTTTACAATAAGATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACTATGAAAAGCGACCAAATACCTGCAGTTAATAATAAGAATGATGGCCATTTAGTTCAATGTCCTGGGTCTCCTAAAATATCACCTTTCCCAAACCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAATGTATATGTCTCTCCATTACGATCGTCTAAGGTACTAATATATTTGTTTGGCTTTCTTCTTTAG 2850 0.4207 MSPPAAPNMEEAKTSVASVDNGDQVESRFAQFCQNGLALDEKSCKEAMNLFGETKHLLQTNVSSMGNGTSEEAERYWFAFIIYSVKRLTQRNEESRTEETENTGLTLCRILRAAKLNIGDFFKELPPYVVKAGPLISNLYGADWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVSTDANVEKNSSVTVHASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILVIHVPARFRNFNILDSSRFVKKSSKGVDLLASLCNIYNTSEDELRKTMEKANNLIADILKKKPCLASECETENLENFDRDGLTYFKDLMEESALLSSLNILEKDYDYMIRNKGELDERLFINENDSLLASGSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSVSSKMAATPVSTAMTTAKWLRTVISPLPSRPSQELERFLTSCDRDVTSDVVHRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEAIKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPPLPKLETSPTQNGDTRSPKRLCTEYRNVLVERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQSSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQMNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARCNGACKQRTGQEHVDIITFYNKIFIPSVKPLLVELGPGGATMKSDQIPAVNNKNDGHLVQCPGSPKISPFPNLPDMSPKKVSATHNVYVSPLRSSKVLIYLFGFLL. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09791 949 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g09791 949 Coils Coil 268 292 - -
Seca4g09791 949 MobiDBLite consensus disorder prediction 388 410 - -
Seca4g09791 949 FunFam Retinoblastoma-related protein 1 419 607 - -
Seca4g09791 949 Pfam Retinoblastoma-associated protein B domain 741 872 IPR002719 GO:0005634|GO:0051726
Seca4g09791 949 SMART DUF3452_2 88 234 IPR024599 -
Seca4g09791 949 Gene3D - 704 896 - -
Seca4g09791 949 Gene3D - 419 607 - -
Seca4g09791 949 FunFam Retinoblastoma-related protein 1 691 908 - -
Seca4g09791 949 Gene3D - 195 353 - -
Seca4g09791 949 SUPERFAMILY Cyclin-like 424 619 IPR036915 -
Seca4g09791 949 Pfam Retinoblastoma-associated protein A domain 416 617 IPR002720 GO:0005634|GO:0051726
Seca4g09791 949 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 939 IPR028309 GO:0006357|GO:0051726
Seca4g09791 949 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Seca4g09791 949 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Seca4g09791 949 FunFam Retinoblastoma-related protein 1 195 353 - -
Seca4g09791 949 SUPERFAMILY Cyclin-like 739 914 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09791 Seca-Chr4 229885329 229893931 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Seca4g09791 RB_A 6.4e-65 CL0065