Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09676 ATGGCCGGAAACTGCTTGCCGTCGGTGACACTCACCGGCAGCGGCCGGCCGGTGCTGGTACCGAATGAGATCGAGTGTTTCTTTCTCTCTGGCGTGGACCTTCTCTGTGAAGACGATCCCAACACGTGGTTCCCTCACCTCAAATCGGGTCTCCTCATCCTCACCACCCACCGCCTCCTCTGGCTCCCCGACGCCGCCACTTCCCCCGGCGGCTCTGCCTCCGCCGTTCCCCTCGCCTCAATCTCCCACATTTTCCCTCACAAGAAGTCCATCAAGTCTGTCTTCGGCTCTCCGAGGATCCGTTTCCAGGTGTCTCTATCGCCGGAGGGTGGATTCGCCGCCGCCGCCTCAAGATCGGTTGTGGCGACCGTCGTGGTGAGGGGGAAAGGGGACTTCGACGCGTTCGTGGCCAAATTTTGGGAGAATTGGCGGGCCAGGGCGTGGGAGGAGCCGGAGAGTGCTCGGAGTTCAGGTTCGAATGCGACGGCTAGGGGAGGAGCGGCATCTTCGTCGTCGAGCGGGATTTATTCGAGTGATGGGACGGTGAGGATGGTGGGAGTGTCGGGGATATTGAGAAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAAGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCAAAAACTTTTGTCTGGTTCAAATTCTCAAAATAATGCAACTAATGATGAAGAGATGGGTTCAAAGGAAGAGATGCAAGATTGGTTATTGAGTGTTGGTATAATATCCCCTGTTACCAAAGAGTCTGCGGGTGCTTTGTATCATCAACAATTATCTCGTCAGTTGGCAGATTTTGTTAAAATTCCACTTGAGAGAGCAGGAGGAATTATCAATCTTATTGATATTTATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGCTCTCTGTGGGAGAAGTTTGATGTCCCAGTCATTCTACGGAAGTTTGATAGTGGAGTCATGGTAATACAGACTAAGTCTCACAGTGATGAGGAGGTTTTCACTAAAATTAAGATGCTTGTTATGAAGCCTGATGCTCTCCGAGCTGGGATAAGTGCTAGTGATGCTGCAATGACACTGGGAGTTGCCCCAGCAATGGCAAAAGAGCATCTCTTGTCTGCTGAGAGCAAGGGTGTACTCTGCAGAGATATTAGTCCTGATGGATTTCGCTTTTATATTAACTTGTTCCCTGAAATTGATCAAGATGATATGTATTTAGTGAAAGATGAAGGGATTTATGCCTCATGGGTAAGGGAAAACCATGCTCGTGGTTAA 1353 0.4982 MAGNCLPSVTLTGSGRPVLVPNEIECFFLSGVDLLCEDDPNTWFPHLKSGLLILTTHRLLWLPDAATSPGGSASAVPLASISHIFPHKKSIKSVFGSPRIRFQVSLSPEGGFAAAASRSVVATVVVRGKGDFDAFVAKFWENWRARAWEEPESARSSGSNATARGGAASSSSSGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQNNATNDEEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKIPLERAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPVILRKFDSGVMVIQTKSHSDEEVFTKIKMLVMKPDALRAGISASDAAMTLGVAPAMAKEHLLSAESKGVLCRDISPDGFRFYINLFPEIDQDDMYLVKDEGIYASWVRENHARG. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09676 450 Gene3D - 10 155 IPR011993 -
Seca4g09676 450 FunFam Vacuolar protein sorting-associated protein 36 4 146 - -
Seca4g09676 450 FunFam Vacuolar protein sorting protein (Vps36) 274 351 - -
Seca4g09676 450 SUPERFAMILY "Winged helix" DNA-binding domain 313 425 IPR036390 -
Seca4g09676 450 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 8 422 IPR037855 GO:0000814|GO:0032509|GO:0043130
Seca4g09676 450 Gene3D - 274 351 IPR036388 -
Seca4g09676 450 Gene3D - 353 424 IPR036388 -
Seca4g09676 450 FunFam vacuolar protein sorting-associated protein 36-like 353 424 - -
Seca4g09676 450 MobiDBLite consensus disorder prediction 150 174 - -
Seca4g09676 450 MobiDBLite consensus disorder prediction 153 174 - -
Seca4g09676 450 Pfam EAP30/Vps36 family 185 409 IPR040608 -
Seca4g09676 450 SUPERFAMILY PH domain-like 6 122 - -
Seca4g09676 450 ProSiteProfiles GLUE domain profile. 9 155 IPR021648 GO:0032266|GO:0043130
Seca4g09676 450 Gene3D - 200 273 - -
Seca4g09676 450 Pfam Vacuolar protein sorting protein 36 Vps36 11 104 IPR021648 GO:0032266|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09676 Seca-Chr4 227509742 227516057 Wgd