Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09672 ATGTTCCATGTTAGGGATTCTTCAATCAAGCTTTTTGGTACAGATATCCACGTTCATATTCCCATTACCGCAGATTCACACTCTCTCACTCAGATTCAGCCACCCATCATCATGAACGGATTTGAAGAATCAACTAGTGCTGAAGTGGATGTTCCTTTGAAGGAAGTATCTGGCAAACAGACTGATCCTCAAGAAGATGCAAACATGTATAAAAGCCCTACTCTTAAACTGGTAGCCAAAGTAGTTCATAGAACAAATGAACATAGGTCTGCTAAAAGAGAAATTGATCATCAAGAAAAAGTTCTTAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACTGCTGGGGGGACAATTAGAAATGTTCCTATTGGAGCTGGTAAGCGCAAAAATAAGCACTCAGCTTTGCAGTATTGTCAGGTTCCTGTGACATCTGATGCAGCATCTGTCATCCAGACAGATTCAAACCCTGCTAGTGATAAGCATTTTTCATCTAGCAAACGTCTTGTGATTCCAGGACCTGTTATAGAAATGGGGAACGTCCCAAGTCTAAGAGAGGAAGCTCCTCTTAGTACATCCCTTGAAACTATGTTAAATCTCAAGGGCCAGACAAAAATTGAAGTGGACTCTTCTACTGTCAAAGATGATAGTGAGGAGCCTTCCAGCTCTTCTATGAGAAATGTTGAATCCAGGGAGAAGGAATATTCAGAAAATATGATAGAGCAGGTTGGTTTGACACAACACTTTAATGGTTTAATTCCTTTACATTCACTTCATTGTTATCCTGTTCCTCCATGGGCTTACCAATGGAATCCATGTTGGAATGCTATAGCTTTTAGGCCTGGTAGCATAACTTCTAGTCCTGCTTACATGGGTTCTACAACCATGGTGGCAGTTCCTGGCTTTTCCACACCAACAGTAGAATTACCAGTGGCACCTTCTTTATTTTGGGGTTGCATGCCAAGCTGGGCTGGAGAAAAGGATGAGTCTTCATTGGTTGGATCTACATTTAGTTGCATCTCATCATCACCTTCATCTTCAGTTAGCAACAGTACCTTTTCTGGTAATAGGTCCCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGGTGAAGATGCAATGCAACCAAATCTTTGGGTACCTAAGACTGTAAGAGTTAATGATCCAGAAGAGGCTGCAAAGAGTTTTATATGGTCAACATTGGGAACAAAATCTGAACAGAACAAACCCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCCAGTTCACATACTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGCTCTGAATCCTTTCAAGAAAGCATTTGA 1461 0.4052 MFHVRDSSIKLFGTDIHVHIPITADSHSLTQIQPPIIMNGFEESTSAEVDVPLKEVSGKQTDPQEDANMYKSPTLKLVAKVVHRTNEHRSAKREIDHQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPIGAGKRKNKHSALQYCQVPVTSDAASVIQTDSNPASDKHFSSSKRLVIPGPVIEMGNVPSLREEAPLSTSLETMLNLKGQTKIEVDSSTVKDDSEEPSSSSMRNVESREKEYSENMIEQVGLTQHFNGLIPLHSLHCYPVPPWAYQWNPCWNAIAFRPGSITSSPAYMGSTTMVAVPGFSTPTVELPVAPSLFWGCMPSWAGEKDESSLVGSTFSCISSSPSSSVSNSTFSGNRSPTLGKHSRDGSTPGEDAMQPNLWVPKTVRVNDPEEAAKSFIWSTLGTKSEQNKPIMKGSVFKSFEPKSNASSHTLDDNQILRANPAAFSRSESFQESI. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09672 486 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Seca4g09672 486 MobiDBLite consensus disorder prediction 372 410 - -
Seca4g09672 486 PANTHER CYCLIC DOF FACTOR 2 6 485 IPR045174 GO:0003700|GO:0006355
Seca4g09672 486 MobiDBLite consensus disorder prediction 235 263 - -
Seca4g09672 486 MobiDBLite consensus disorder prediction 238 263 - -
Seca4g09672 486 MobiDBLite consensus disorder prediction 372 395 - -
Seca4g09672 486 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Seca4g09672 486 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09672 Seca-Chr4 227458702 227462186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09672 98 485 C2C2-Dof Transcription Factor Family AT5G39660 38.609 8.96e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g09672 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09672 - - gmx:102664782 617.076