Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09670 ATGGCTGCCACTGCTACTGCTTCGTTCCACTTTCCATGTCCAACAACACTTTCTTCTTCTCATTCTCAACCTTCCCTCTCTTCCTTCTCATTCAAGGATTACCCTTACACTTCTCCAACCCTTCCTTCCCGCCAAAATATCTGCGTGCCCACCATTACCCTCTCTCTCTCTGCTTCCACAAACCCAACCTTGCTCGTAACGGCTTCTCGTACCACGGAGCCCATGGTTCCCCCTTACAACGTTTTGATTACCGGGTCAACTAAAGGAATAGGGTATGCATTTGCAAAAGAGTTTCTAAAAGCTGGTGACAATGTCGTAATTTGCTCAAGATCATATGAAAGGGTAGAGACTGCTGTCGAGAGCTTGAAAGTAGAATATGGGGAGCAGCATGTGTGGGGCACTAAATGTGACGTGAGAAATGGAGAGGATGTGAAAAATTTAGTTTCATTTGCTCAAGAAAAACTGAAATACATTGATATATGGATCAATAATGCTGGATCAAATGCATACAGCTATAAGCCACTTGCTGAGGCATCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATGAAGATGATGGCGAGCCAGCCTCGCGGAGGTCATATTTTCAATATTGATGGAGCTGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGCGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCAGATGCAAGATGTTAAAAATGTCATGGTGCATAATCTTTCGGTAATTACAAGAAAATTAGAGGGGGATGTCACAATTACGGTATTACAGCTTAGTGGAAGCTTAAACATATACACTATTGTCAAAACTGAATGCTTCTAG 894 0.4262 MAATATASFHFPCPTTLSSSHSQPSLSSFSFKDYPYTSPTLPSRQNICVPTITLSLSASTNPTLLVTASRTTEPMVPPYNVLITGSTKGIGYAFAKEFLKAGDNVVICSRSYERVETAVESLKVEYGEQHVWGTKCDVRNGEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAMKMMASQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSVITRKLEGDVTITVLQLSGSLNIYTIVKTECF. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09670 297 Pfam short chain dehydrogenase 81 261 IPR002347 -
Seca4g09670 297 CDD SDR_c 81 256 - -
Seca4g09670 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 220 248 IPR020904 GO:0016491
Seca4g09670 297 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Seca4g09670 297 PRINTS Glucose/ribitol dehydrogenase family signature 233 252 IPR002347 -
Seca4g09670 297 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Seca4g09670 297 PRINTS Glucose/ribitol dehydrogenase family signature 206 222 IPR002347 -
Seca4g09670 297 Gene3D - 79 286 - -
Seca4g09670 297 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 66 265 - -
Seca4g09670 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Seca4g09670 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 220 IPR002347 -
Seca4g09670 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 233 252 IPR002347 -
Seca4g09670 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 273 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09670 Seca-Chr4 227436650 227445197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09670 81 250 Acyl Lipid Metabolism Gene Families AT1G24360 32.386 3.92e-13 67.0