Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09646 ATGGCTTCGGAGAAGAAACTCTCGAATCCCATGAGGGAAATCAAAGTGCAGAAGCTCGTCCTCAACATCTCCGTTGGTGAGAGTGGTGATCGTCTCACCAGAGCTGCCAAGGTGTTGGAGCAGCTCAGTGGCCAAACCCCAGTCTTTTCCAAAGCAAGGTACACTGTCCGTTCCTTTGGAATTAGGAGAAATGAAAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTGCGAAGAAACTTTAGCGATACTGGGTGTTTCGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAATTGTTCTATTTATGTTGAGCATTGTTTCTGTTTAAGGTATGATCCTTCAACTGGTATTTATGGAATGGACTTCTTTGTTGTTCTGGAGCGTCCTGGTTATCGTGTGGGACGTCGTCGCCGATGCAAGTCTCGTGTTGGGATCCAGCATCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAAGGTGTGATCCTCAACAAGTCACAAGCAATTGTGTAA 582 0.4519 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGINCSIYVEHCFCLRYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09646 193 FunFam 60S ribosomal protein L11 2 186 - -
Seca4g09646 193 SUPERFAMILY RL5-like 8 185 IPR022803 -
Seca4g09646 193 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 184 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca4g09646 193 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 188 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca4g09646 193 Pfam Ribosomal protein L5 9 62 IPR031310 -
Seca4g09646 193 Gene3D - 2 189 IPR022803 -
Seca4g09646 193 Pfam ribosomal L5P family C-terminus 66 176 IPR031309 -
Seca4g09646 193 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09646 Seca-Chr4 227028326 227030511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09646 1 193 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 88.601 1.19e-124 347