Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09635 ATGGAATTTCAGGTAACATTGTTTGCTGTACACTGTGCTGGATGCTTTAACTATCTAATTGCAGATAGGTACCCTGATTCTAAGAGGACATGGATTGGTGCTGTGTACCCAAATTTTAAAGAATTAAGTCTTTGGGACAGATATGTGACATCCATATATTGGTCTATTGTCACACTTACTACTACTGGTTATGGAGATTTGCATGCTGAAAACACAAGAGAGATGCTGTTTGATATCTTTTATATGTTGTTCAACTTAGGATTAACAGCATACATCATTGGAAACATGACCAACCTTGTGGTCCACTGGACAAGCCACACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCATCAAGAAATCACCTACCCCATGATATACAGGATCAAATATTGTCACACTTGTGTTTGAGGTTCAAAACAGAAGGATTGAAGCAACAAGAAACAATAAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCTTACCATCTATTTTTTCCAGTTATACAAAAGGCCTACCTCTTCCAGGGAGTTTCACATGACTTTCTTTTCCAATTGGTTACAGAAATGGATGCTGAGTACTTCCCACCTAAGGAAGATGTTATACTACAAAATGAGTCTCCAACAGATCTTTATATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCCATGTTGATGGTTGTGATCAAGTTTTGAAGAAGGCAATCACAGGAGATACATTTGGAGAGATTGGAGTTTTATACAATAGACCACAGCCTTTCACTGTTCGGACCACAGAACTTTCTCAAATTTTAAGACTCAGTAGAACTTCATTAATGAATGCCATACATGCAAATCCAAAAGAAGCACCACTTATAATGAAAAATCTTTTTATGGGGCTAAGGGGACATGAAGAATTGGGTTTTGAATATCAACCTACAGACCCTGGATTGGCTCATCAGGGAATGCATGATGGGGACAACATAAGGAGAAACTCTTGTCATACATGTACCAATAATTCACAGGGGGGAGCCAGATTGCACACCATGATTCCTGGAGGTGGAAAAAGAGAACTTTATGCTGCTGCACATAGAGATCATCTAGGCATGGTTGAAATTCAGATAGAAAAAGAAGCAAATGAAAAGAACCTAAATCCCATAAGATGGAAACAGAAGGCTCAAGTAGACCAACAACAGAACAAGGGCATAATGAATCTTGAAGATGGGAAGACATTAGATGAACATATAGTAGAGTTTGTGCAGCCAGAAATCCTTGATCATGCTAGGAATGATCCAATCAGAAAGAGAAGAGAAGATGTTCTTAAAACTATCAACGCTCCATTAGGAAAGGTACACACAAAGTCTTGTTCAAGTAACTCTAATCATCCAACTGAAAGAGAAGCAGCAATATCTGTCAATAAGAGAGTTACCATCCACTTTGTAAGCAAAGACAGAACTACCTCACAGGGACAATATGGCAAGTTGATAATTCTACCTGATTCATTAGAAGAGCTTCTCAAGATAGCTGGAGAAAAGTTTGGGGAGTCCAAGCCTACAAAAGTAATGAACACAGAGAATGCTGAGATAGATGATATTGGTGTCATTCGAGATGGTGATCATCTCTTTTTTCTTTGCAATGACAATGAAAATTTGAGTTCATAA 1653 0.386 MEFQVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKELSLWDRYVTSIYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTAYIIGNMTNLVVHWTSHTRNFRDTVRAASEFASRNHLPHDIQDQILSHLCLRFKTEGLKQQETINGMPKAIRASIAYHLFFPVIQKAYLFQGVSHDFLFQLVTEMDAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRHVDGCDQVLKKAITGDTFGEIGVLYNRPQPFTVRTTELSQILRLSRTSLMNAIHANPKEAPLIMKNLFMGLRGHEELGFEYQPTDPGLAHQGMHDGDNIRRNSCHTCTNNSQGGARLHTMIPGGGKRELYAAAHRDHLGMVEIQIEKEANEKNLNPIRWKQKAQVDQQQNKGIMNLEDGKTLDEHIVEFVQPEILDHARNDPIRKRREDVLKTINAPLGKVHTKSCSSNSNHPTEREAAISVNKRVTIHFVSKDRTTSQGQYGKLIILPDSLEELLKIAGEKFGESKPTKVMNTENAEIDDIGVIRDGDHLFFLCNDNENLSS. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09635 550 CDD CAP_ED 178 284 IPR000595 -
Seca4g09635 550 Gene3D Helix hairpin bin 102 168 - -
Seca4g09635 550 ProSiteProfiles KHA domain profile. 472 550 IPR021789 -
Seca4g09635 550 SUPERFAMILY Voltage-gated potassium channels 5 139 - -
Seca4g09635 550 Gene3D Jelly Rolls 171 303 IPR014710 -
Seca4g09635 550 Pfam Cyclic nucleotide-binding domain 198 281 IPR000595 -
Seca4g09635 550 SUPERFAMILY cAMP-binding domain-like 105 294 IPR018490 -
Seca4g09635 550 Gene3D - 3 101 - -
Seca4g09635 550 PANTHER POTASSIUM CHANNEL AKT1 350 542 IPR045319 GO:0005249|GO:0006813
Seca4g09635 550 PRINTS EAG/ELK/ERG potassium channel family signature 48 65 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09635 550 PRINTS EAG/ELK/ERG potassium channel family signature 74 85 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09635 550 PRINTS EAG/ELK/ERG potassium channel family signature 92 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca4g09635 550 ProSiteProfiles cAMP/cGMP binding motif profile. 178 280 IPR000595 -
Seca4g09635 550 Pfam KHA, dimerisation domain of potassium ion channel 471 540 IPR021789 -
Seca4g09635 550 SMART cnmp_10 178 295 IPR000595 -
Seca4g09635 550 Pfam Ion transport protein 6 107 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g09635 550 FunFam Potassium channel KAT2 166 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09635 Seca-Chr4 226861693 226866541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09635 4 543 Ion Channels AT5G46240 54.074 0.0 572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09635 4 226861693 226866541 Seca4g09635 4 226861693 226866541 ECH