Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09629 ATGGGTGTGGTGATAATCGACGGCACAACGGTGAGGGACTTCGTGAGCAACGAGGCGCAGTTCATCAAGAGCGTGGATGAGCAGTTCGCGGCGCTCGACCTCAACAACGACGGCGTTTTGTCGCGCGCGGAGATCCGCACCGCTTTCGAGTCCATGAGGCTCATTGAGACTCACTTCGGCATCGACGTCGCTACCCCGCCGGAGAAGCTCTCCAAGCTTTACGACTCCGTATTCGATGGCTTCGACGTCGACGGTAGCGGCACCGTCGACCGCACCGAGTTCAGGTCCGAGATGAAGAAGATCATGCTCGCCATCGCCGATGGTTTGGGATCCTCCCCCATTCAGATGGTCCTGGAGGATGACTCTCACAGCCTCCTCCAGAAAGCCGCTGACCTCGAAGCTTCCAAGACCGCCGCCGCCTGA 423 0.5957 MGVVIIDGTTVRDFVSNEAQFIKSVDEQFAALDLNNDGVLSRAEIRTAFESMRLIETHFGIDVATPPEKLSKLYDSVFDGFDVDGSGTVDRTEFRSEMKKIMLAIADGLGSSPIQMVLEDDSHSLLQKAADLEASKTAAA. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09629 140 Gene3D - 18 53 - -
Seca4g09629 140 Gene3D - 54 128 - -
Seca4g09629 140 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Seca4g09629 140 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 121 - -
Seca4g09629 140 Pfam EF-hand domain pair 27 98 IPR002048 GO:0005509
Seca4g09629 140 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Seca4g09629 140 SMART efh_1 24 52 IPR002048 GO:0005509
Seca4g09629 140 SMART efh_1 73 101 IPR002048 GO:0005509
Seca4g09629 140 SUPERFAMILY EF-hand 22 103 IPR011992 -
Seca4g09629 140 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Seca4g09629 140 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09629 Seca-Chr4 226791167 226791589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09629 1 140 EF-hand Containing Proteins AT2G44310 70.714 1.41e-69 204