Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09605 ATGCATGTTTATGAAGCATTATCATTGTACCTAAATTGGCTTCTTGGGTTGCTTGGTTTAGCAGAAAGGAGGGCACCCATTTCTGATCACCCCCTCATGTTGGCAATCGTGTTTGGCTTTGGGTGGCTCTTACTTCGATCTGCAGATAACAGAGAACGCAATCCAGATGCCAATGAGTTTGACCAGGAGCACCCCAATGGTGAAATAGACCATGATTTTTATGGCACTCCAGAGAGTTACGCTGCTTGTGCCTTCTGTGGCAATTTAAGCACCGCAAGGTGCTCACGCTGCAAAGTTGCTAGATATTGCTCAATGGAATGCCAAAGTAGACATTGGAGGTCAGGGCATGAATATGAATGCTATGAATCAGAATCTGAAGGAGATGATCATCAAGCAAGACCTATTCATGATGACGGAATCTCTATGCTTGTCGATAAGCCTGAAAGGGAGATTACCTCTGATGGCGATGGTGTGGGAGTGGATGTGTCCAGTGGCAGCGACGTTAACAACTTCGATGGCTGTGAAGTATGTGGTAGCCCAACTACCACAAGTTGTTCACGATGCACACTCGTCAGATACTGCTCAACAAAGTGCTTGATTAGGAACTGGGGATTGCATAAAGATCACTGCATTGCAGGGGAAGCGAATTCAGCTCCAGCAGAAAGACCTAATGCAGATGTTGGAGTTCTCGAGAATTCATATCAAGAGGAAGAGAATATTCATACGTCTCCCCTTTATTTGGAGCTTCACCCGGAAGGAACCACAAACTTCAGGTCTCCAATTAAAGCATCACAGGATCCTACCAAGGATATCCAGGTGCATAGAACTGAATGGATGAGATATCTTCAGGATGAAGTAGAAAAGTCTAGGAAAGAGATTTCAATACTAAAATCAGAGCGTGATGTTTGGAAGAAGCGAGCAAATTTAACTAGAGATATATATCAACGCATCAAGAAACAATCTGAAGACCAGTTGTTTGTGTTGAAAACTGAAAAGGAGTCAATATCAAATGCTGAGAAGCAAGCTTGCAATGTGATTCATAGTTTACATGAGAGGATAAAGCTCTTGCAGATTGTAGTGCAAGAGAGAATTTCAGAGAAGAGAAGGCTAGAAGAACATACAAAAATGGTAGAGAGTGAATGTGCTAAGCTGAAGAAAGAACAGCAAGAAGAGCATAAACGTGCTCAATGGTTTACTGTGGAGTCTAACAGGAATCATGAGATTGCACAAATTGCCATGAGAGAAGCTGAAGCAGTAAGACGAGAGCTTCAAGGAGAGCGTGAACATGTCCAGCGACTTAAAGAGAATTTTCTTAGAGATTTTAGATTTGCTGAATCTAGAGCTGCTGTTGCTGAGGCAAAACTCAGTGATCTTCATAGGAGAGTCAGATTGACAGATTATAAGGTGAAAATCTTTTCAACTTCACTGTATGTGTGTTTCTTCACCTTTCTTGCTTGCCTGTTGACACCTTAG 1473 0.4243 MHVYEALSLYLNWLLGLLGLAERRAPISDHPLMLAIVFGFGWLLLRSADNRERNPDANEFDQEHPNGEIDHDFYGTPESYAACAFCGNLSTARCSRCKVARYCSMECQSRHWRSGHEYECYESESEGDDHQARPIHDDGISMLVDKPEREITSDGDGVGVDVSSGSDVNNFDGCEVCGSPTTTSCSRCTLVRYCSTKCLIRNWGLHKDHCIAGEANSAPAERPNADVGVLENSYQEEENIHTSPLYLELHPEGTTNFRSPIKASQDPTKDIQVHRTEWMRYLQDEVEKSRKEISILKSERDVWKKRANLTRDIYQRIKKQSEDQLFVLKTEKESISNAEKQACNVIHSLHERIKLLQIVVQERISEKRRLEEHTKMVESECAKLKKEQQEEHKRAQWFTVESNRNHEIAQIAMREAEAVRRELQGEREHVQRLKENFLRDFRFAESRAAVAEAKLSDLHRRVRLTDYKVKIFSTSLYVCFFTFLACLLTP. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09605 490 ProSiteProfiles Zinc finger MYND-type profile. 174 210 IPR002893 -
Seca4g09605 490 PANTHER PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED 55 129 - -
Seca4g09605 490 Pfam MYND finger 83 120 IPR002893 -
Seca4g09605 490 Pfam MYND finger 174 210 IPR002893 -
Seca4g09605 490 SUPERFAMILY HIT/MYND zinc finger-like 79 121 - -
Seca4g09605 490 ProSiteProfiles Zinc finger MYND-type profile. 83 120 IPR002893 -
Seca4g09605 490 SUPERFAMILY HIT/MYND zinc finger-like 171 211 - -
Seca4g09605 490 Coils Coil 406 436 - -
Seca4g09605 490 ProSitePatterns Zinc finger MYND-type signature. 83 120 IPR002893 -
Seca4g09605 490 Gene3D - 71 125 - -
Seca4g09605 490 Gene3D - 163 214 - -
Seca4g09605 490 Coils Coil 279 299 - -
Seca4g09605 490 Coils Coil 367 390 - -
Seca4g09605 490 ProSitePatterns Zinc finger MYND-type signature. 174 210 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09605 Seca-Chr4 226427137 226436433 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09605 53 120 Miscellaneous Gene Families AT4G31670 44.928 1.95e-10 61.2