Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09592 ATGGCGAAAACGAGGCCAGGGAAAAAGGACTTGGACTCATACACCATCAGAGGGACCAATAAGGTCGTCAGAGCTGGAGACTGTGTTCTGATGCGGCCTATGGACACGTCGAAGCCACCCTACGTAGCGCGCGTGGAGAAGATCGAACAAGATAATAGGAGCAACGTGAGGGTACGCGTGAGGTGGTATTATAGGCCTGAAGAGTCGATTGGGGGTCGCAGACAGTTCCATGGTGCTAAAGAGCTTTTCCTCTCTGACCATTACGATGTTCAGAGTGCTCACACCATTGAAGGCAAGTGTATTGTTCATTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGACCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTGTGTTCTGAATGTTCATCTGATGATGATATAAAGAAACCCCAAGCTACATTTTCTGCATCACCAGGAGCTGATAGCAAGGGGGAGGGGAAAGGGGACACATTCCTGAGGAAGGGACGGATGGCTTAA 672 0.4762 MAKTRPGKKDLDSYTIRGTNKVVRAGDCVLMRPMDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDIKKPQATFSASPGADSKGEGKGDTFLRKGRMA. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09592 223 PANTHER OS08G0421900 PROTEIN 1 208 - -
Seca4g09592 223 Gene3D - 2 132 IPR043151 -
Seca4g09592 223 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Seca4g09592 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Seca4g09592 223 FunFam Chromatin remodeling protein EBS 1 132 - -
Seca4g09592 223 Pfam BAH domain 23 135 IPR001025 GO:0003682
Seca4g09592 223 Pfam PHD-finger 140 188 IPR019787 -
Seca4g09592 223 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Seca4g09592 223 CDD BAH_BAHCC1 22 156 - -
Seca4g09592 223 SMART PHD_3 140 187 IPR001965 -
Seca4g09592 223 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Seca4g09592 223 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Seca4g09592 223 MobiDBLite consensus disorder prediction 189 223 - -
Seca4g09592 223 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Seca4g09592 223 SMART BAH_4 21 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09592 Seca-Chr4 226270065 226275410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09592 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 6.70e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g09592 BAH 4.7e-23 No_clan