Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g09511 | ATGTTACAGAGAACATGGGAAAGGGCAAAGCTGGCAGCTACATTGGATCATGTTGTTGTGGCAACTGATGATGAAAAGATTGCTGACTGCTGTCGACAATTTGGAGCTGATGTCATAATGACATCAGAATCTTGCCGAAATGGTACTGAGCGCTGCAATGAAGCCCTACAGAAGCTTGGGAAAAAATATGATATTGTTGTAAACATCCAAGGTGATGAGCCACTTATTGAACCTGAAATAATTGATGGTGTTGTCAAAGCTTTACAGGCAGCTCCAGATGCAGTGTTCAGCACTGCAGTCACATCTTTAAAGCCTGAAGATGCACATGATCCAAATAGAGTGAAATGTGTGGTTGATAATCGTGGTTATGCCATCTATTTTTCACGAGGATTAATCCCATTCAACAAGTCAGGGAAGGTCAATCAACAGTTCCCTTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTCTAAAGATATACTCAGATCTTCAACCTACTCCATTGCAACTAGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTATAAGATGAAGGTGATAAAAGTTAACCACGAGGCCCATGGTGTTGATGCTCCTGAAGATGTTGAAAAGATAGAATCTCTAATGCGTGAGAGGAACTTGTCTTGA | 663 | 0.4118 | MLQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKLGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLKIYSDLQPTPLQLEEDLEQLKVLENGYKMKVIKVNHEAHGVDAPEDVEKIESLMRERNLS. | 221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g09511 | 220 | CDD | CMP-KDO-Synthetase | 1 | 213 | IPR004528 | GO:0008690 | |
| Seca4g09511 | 220 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 218 | IPR029044 | - | |
| Seca4g09511 | 220 | FunFam | 3-deoxy-manno-octulosonate cytidylyltransferase | 1 | 215 | - | - | |
| Seca4g09511 | 220 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 1 | 217 | IPR029044 | - | |
| Seca4g09511 | 220 | PANTHER | 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE | 1 | 219 | - | - | |
| Seca4g09511 | 220 | Pfam | Cytidylyltransferase | 1 | 187 | IPR003329 | - | |
| Seca4g09511 | 220 | NCBIfam | 3-deoxy-manno-octulosonate cytidylyltransferase | 1 | 208 | IPR004528 | GO:0008690 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g09511 | Seca-Chr4 | 224843873 | 224847411 | Wgd |