Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09163 ATGGATCCTTCTAGTGGACAACCCCAGCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTAGGTTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGACCTCAGCCAGAACAAGCTCTGAAATGTCCAAGATGTGACTCCACCAACACAAAATTCTGTTACTACAACAACTACAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCAGGAAGAACAAGAGGTCATCATCTTCATCATCAAAGAGGGCTCAGGATCAAACATTCCCACCCAGTCCCAACCCACTCACAAGCCTCCCTCATTCCTCTTATGACTCCAATGACTTCAACCTAGCATTAGCTAGGCTCCAAAAACAATCATGTGGACAATTGGGATATGCTGACCATGATCTTTCAATTTTGGGGAATCCCACAAGCTCCTTTAATGACATTCTTGGCAATTCAGGCATGAACCATATGTCAACAAACCCTGGATTCTTGGATGCACTAAGAAGTGGGTTCCTTGGGAGTGGAACACAGTATAATAATAATAATAATTTTCAGAACATGTACTCTGTGTATGGAAATGGGGACACTGGGGAGGTGGATAGTGGAAGTTCTTGTGGGGTTGGGGTTAGTGGAGATCAGATGATGATTCCTAATTATGATCAAGAAATGAGCAATGCAGCCACTCAAGCAGTGGCTGTCACTACCATGAAACAAGAAGTGTGCAGTGGCAGGGAACAAAGTGAAAGCAAGGTGTTTGGGGGTTTCCCTTGGCAATTCAATGGAGGCTCAAACATGGGTGAAATTGATTCAGGAAGAGCAAGTTGGAATGGTTTCATATCTCCTTGGCATGGGCTTCTACATAGTCCCCTGATGTAG 921 0.4473 MDPSSGQPQQQMSSQSLENMLGCSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRAQDQTFPPSPNPLTSLPHSSYDSNDFNLALARLQKQSCGQLGYADHDLSILGNPTSSFNDILGNSGMNHMSTNPGFLDALRSGFLGSGTQYNNNNNFQNMYSVYGNGDTGEVDSGSSCGVGVSGDQMMIPNYDQEMSNAATQAVAVTTMKQEVCSGREQSESKVFGGFPWQFNGGSNMGEIDSGRASWNGFISPWHGLLHSPLM. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09163 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 204 IPR045174 GO:0003700|GO:0006355
Seca4g09163 306 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Seca4g09163 306 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca4g09163 306 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca4g09163 306 MobiDBLite consensus disorder prediction 91 120 - -
Seca4g09163 306 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g09163 306 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g09163 306 MobiDBLite consensus disorder prediction 84 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09163 Seca-Chr4 217476512 217478446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09163 8 306 C2C2-Dof Transcription Factor Family AT2G28510 39.394 2.41e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g09163 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09163 - - gmx:100799737 405.986