Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08167 ATGAAAATGATGAAACCATCGATGCTTAGATCCGTGCACTCAGCCGTGTCCCGTGGCTGCTCTCAGGCGGCTCGCCGTGGCTACGCCACGGAGCCGGTGCCGGAGCGCAAGGTTGCCGTCCTTGGCGCCGCCGGAGGGATCGGACAGCCCCTCTCTCTGTTGATGAAACTCAACCCCCTTGTTTCCTCCCTCTCCCTTTACGATATCGCCGGAACCCCTGGCGTCGCAGCCGACGTCAGCCACATCAACACCAGATCTGAGGTTGTTGGGTACCAAGGTGAAGAGCAGCTTGGAAAAGCTTTGGAGGGAGCAGATGTTGTCATAATCCCTGCTGGTGTGCCCAGAAAGCCTGGAATGACTCGTGATGACCTTTTCAACATTAATGCCGGCATTGTCAAGTCATTGTGTACTGCCATTGCCAAGTACTGTCCCAATGCCCTTGTTAACATTATAAGCAATCCTGTGAACTCCACTGTTCCTATTGCTTCTGAGGTTTTCAAGAAAGCAGGAACATACGATGAGAAGAGATTGTTCGGTGTCACCACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAGGCCAAAGTTCCAGTTGCTGAGGTCAATGTACCTGTTGTAGGTGGCCATGCTGGCATTACTATTCTGCCTCTATTTTCTCAAGTACCTTCCTGCTCTTCAACTCAACATTGTCCTCCTGAGTCCTGA 711 0.5148 MKMMKPSMLRSVHSAVSRGCSQAARRGYATEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQGEEQLGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNIISNPVNSTVPIASEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQVPSCSSTQHCPPES. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08167 236 Gene3D - 35 180 - -
Seca4g08167 236 FunFam Malate dehydrogenase 34 180 - -
Seca4g08167 236 ProSitePatterns Malate dehydrogenase active site signature. 180 192 IPR001252 GO:0006108|GO:0016615
Seca4g08167 236 Gene3D - 181 235 IPR015955 GO:0003824|GO:0016616
Seca4g08167 236 SUPERFAMILY LDH C-terminal domain-like 180 224 IPR015955 GO:0003824|GO:0016616
Seca4g08167 236 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 181 229 IPR022383 GO:0016616
Seca4g08167 236 PANTHER MALATE AND LACTATE DEHYDROGENASE 15 227 - -
Seca4g08167 236 Pfam lactate/malate dehydrogenase, NAD binding domain 37 179 IPR001236 GO:0016491
Seca4g08167 236 NCBIfam malate dehydrogenase 37 228 IPR010097 GO:0006099|GO:0030060
Seca4g08167 236 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 179 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08167 Seca-Chr4 193726294 193730355 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08167 4 193726294 193730355 Seca4g08167 4 193726294 193730355 ECH