Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08124 ATGAGAATAAGAATCCCCTTTCTGCTACTGAAATCAGTCTCACCGATCCATCCTCCCTGTCCCCTACGCTACCACAATGCCGCATCACCTTCCCATCCTTTCCCAACACCATGTTCCTTCATACCCAGATTCCTCTCCACCACCTCTTTACCCCTCCCTGCCCCCGAACTGGTCGAACCCTTCTGCGACCTCTCCGACGTCGTTTCCTCCCCTCAAAACCTCCAACCCTCCCCCTGGCTCACCCAAATCCTCAACCTCCTCGACGGTTCCCCTTCCATGGAATCCAACCTCGATTCCTTCTGCCGCCGCTTCCTCATCACCCTCTCCCCTTCCTTCGTCGCCCACGTCCTCCGCTCCCTCAACAACCCCGACACCGCCTACCGCTTCTTCACTTGGGCTTCCAAACAGAACAACTATTCCCACACCCTCGACTGCTACGTTTCACTCATCAACCTCCTCCTCTCTTCCTCCACTGACACCACCACTGCCTTAAAAGTCTTCTCGAAGCTTCGAAAGAAGCAGCTCCCACTGACAAACCTCGCAGCGAATTCGCTAATCAAGAGCCTCGGCGGTGCGGGCTTGGTGGAAGAGCTTCTTTGGGTTTGGCGCGGAATGAAGGAGCAGGGCATTGAGCCCGGGCTTTACACCTACAATTCATTACTAAACGGGCTTGTGAGTTCCTCCCTTGTTGAATCCGCTGAGCGGGTTTTCGAGGCCATGAAGGAGGGAAGAACAAAGCCAGATGTGGTCACCTATAACACTTTGATCAAGGGGTATTGCAAAGTGGGGAAAACTCGCAAGGCGCTGGAGATTGTTCGGGAGATGGAGGCTGGGAGCTTGGAGCCTGATGTGGTTACTTATATGACCTTAATGCAGGCTTGTTATGCAGAAACGGATGTGGATTGTTGTTTGAGTCTTTACCATGAGATGGAAGATAAAGGATTGGAGGTTCCTCCCCATGCTTATAGTTTGGTGATATGCGGGCTTTGTAGGCAGGGGAAGATTGCTGAGGGCTATGCTGTGTTTGAGAATATGTTTCGGAAAGGTTGTAAGGCCAATAAGGCTGTATACACTGCTCTGATTGATTCTTATGGTAAGAGTGGGAACTTGGATGGGGCTATGAGGCTGTTTGAGAGGATGAAGAAAATTGATGGGATTGAACCGGATGAGGTTACTTATGGTGCTATTGTGAATGGATTGTGCAAAAGTGGGAGAATAGAAGAAGCTTTAGGTTACTTGGAGTTTTGTAAGGAGAATGGTGTTGTCATCAATGCTGTGTTTTATTCAAGCTTGATTGATGGTCTTGGGAAGGCAGGGAGGGTGGAGGAAGCTGAGAGGCTGTTTGATGAGATGGGGGAGAAGGGGTGCCCTCAGGATTCGTATTGCTACAATGCCCTCATTGATGGATTGTGCAAGTGTGGTAGGATTGATGATGCTCTTGTGTTGTTTAAGAGGATGGAACATGAAGGTTGTGAGCAAACTGTTTATACTTATACTATAGTCATAAGTGAGCTATTCAAGGTGCATAGGAATGAGGAGGCGATGAACATGTGGGAGGTGATGATTGACAAAGGTGTCACTCCAAATGTTGCCTGTTTCAGGGCACTTTCAATTGGATTGTGTCTTTCAGGTAAGGTTGCCAGGGCTTGTAAGGTGTTGGATGAGCTTGCCCCTATGGGTGTTGTTGTTGAAAATGCCTATGAAGACATGATTAGTGCGCTGTGCAAAGCTGGTCGTGTGAAGGAAGCTTGCAAATTGGCTGATGGGATTGTGGATAGGGGTAGAGAGATACCTGGGAAAGTTAGGACTGTGATGATTAATGCCTTGAGGAAAGCTGGGAATGCAGATTTGGCAATCAAGTTGATGCATAGCAAGATTGGAATTGGGTATGACAGGATGCGGAGTGTTAAAAGGCGAGTGAAGTTCCAAACCCTTGTTGATAGTTGA 1947 0.4869 MRIRIPFLLLKSVSPIHPPCPLRYHNAASPSHPFPTPCSFIPRFLSTTSLPLPAPELVEPFCDLSDVVSSPQNLQPSPWLTQILNLLDGSPSMESNLDSFCRRFLITLSPSFVAHVLRSLNNPDTAYRFFTWASKQNNYSHTLDCYVSLINLLLSSSTDTTTALKVFSKLRKKQLPLTNLAANSLIKSLGGAGLVEELLWVWRGMKEQGIEPGLYTYNSLLNGLVSSSLVESAERVFEAMKEGRTKPDVVTYNTLIKGYCKVGKTRKALEIVREMEAGSLEPDVVTYMTLMQACYAETDVDCCLSLYHEMEDKGLEVPPHAYSLVICGLCRQGKIAEGYAVFENMFRKGCKANKAVYTALIDSYGKSGNLDGAMRLFERMKKIDGIEPDEVTYGAIVNGLCKSGRIEEALGYLEFCKENGVVINAVFYSSLIDGLGKAGRVEEAERLFDEMGEKGCPQDSYCYNALIDGLCKCGRIDDALVLFKRMEHEGCEQTVYTYTIVISELFKVHRNEEAMNMWEVMIDKGVTPNVACFRALSIGLCLSGKVARACKVLDELAPMGVVVENAYEDMISALCKAGRVKEACKLADGIVDRGREIPGKVRTVMINALRKAGNADLAIKLMHSKIGIGYDRMRSVKRRVKFQTLVDS. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08124 648 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 117 449 - -
Seca4g08124 648 Pfam PPR repeat family 354 402 IPR002885 -
Seca4g08124 648 Pfam PPR repeat family 424 472 IPR002885 -
Seca4g08124 648 Pfam PPR repeat family 247 294 IPR002885 -
Seca4g08124 648 Pfam PPR repeat family 495 541 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 230 344 IPR011990 GO:0005515
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Seca4g08124 648 Pfam PPR repeat 321 350 IPR002885 -
Seca4g08124 648 Pfam PPR repeat 215 242 IPR002885 -
Seca4g08124 648 Pfam PPR repeat 183 210 IPR002885 -
Seca4g08124 648 Pfam PPR repeat 570 591 IPR002885 -
Seca4g08124 648 Pfam PPR repeat 603 623 IPR002885 -
Seca4g08124 648 SUPERFAMILY HCP-like 117 493 - -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 496 530 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 183 212 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 215 249 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 428 459 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 567 594 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 391 424 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 356 390 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 250 284 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 321 353 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 285 316 IPR002885 -
Seca4g08124 648 NCBIfam pentatricopeptide repeat 461 492 IPR002885 -
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 562 639 IPR011990 GO:0005515
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 80 229 IPR011990 GO:0005515
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 383 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 487 561 IPR011990 GO:0005515
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 345 414 IPR011990 GO:0005515
Seca4g08124 648 Gene3D Tetratricopeptide repeat domain 415 486 IPR011990 GO:0005515
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Seca4g08124 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08124 Seca-Chr4 191445972 191447918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08124 83 629 Glycosyltransferase AT1G05670 26.449 2.00e-47 176