Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08064 ATGGGCACTGATGCAATAGGAATTGAAGGGTACTCTCCGCTAAAACATTTGAGATTGGAAATTGAAGTAAAAGAGGGAACTTTTTGTATCTGCTTTTGGGTTTACTTGACGAGTTCCACTACATTCCCTGCTACTATTATCCAACAGGTTTACTCCGATATATCCGAAAGTGCTCCTTTTCTTGTTATTAATGATGACAAGAGAATCAATATTTTACCAGTTCTTGCCTTACATGAAGAAGCTCCTGATACTGGCAATATAAATTCATGGACAGAAGTTCCACATGCAACTTCTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAGTCATATCCACCTTCAGATTAATGGAGAGATTGTAGGAGATAAGTCTTTGTCTTCCTTATTAAATAAGGAAACCGATTCAAGTAATTTGAAGAAAATAACTTTGGCCAATGTTGGTGGAGATGGAAATAGTGTGCAGGGTTATGTGCACAATTTTGAAGTATTCCCTATTGCTTCTTCTATTAAGGATCACCATTTAAAGAACCCTCCTTTGAAGTTATCAATTGATGAATCATCTGCATCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGATGTTGTTCTATCAGATGCCTCCGGACAGCCTGTAGATCAGGAGAATGAGCAGGTTTTTGCTTCACTTTTATACGCTGACACACGGGCTCCAGTGGAGAATACAACTGATGAAGAAGCACCCCTTTTGGCTAGCTATGATGGAATTGAATTTTCTTCGAGTGAAAGACCAAGTAAACTTTTACTGGGGCGTGCATCATTTAAGCTCAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCTTCATCAGATTTTTTATTCCAAAACTAGGAAATTATCCTTTTCTTGAGACATACACCCGTCCAATTCGATGCATCTCTAGGAGCCGTAACACAAGATTATCCACTTTGGTGTGGAAAAGGCCAACTCCTGCCCTTCACCGACTTAGTTTGTCGCAGTCTTCACCAATGGATGATGGGTCATTGGAACATCTGCATTCTGGTCATGAAACAAAAGTCAATCCATCGATGAAGCGGTTTAGAGTTGGACATGACAAGATATCTGTATCAGTGAAGACTGACCCCACCACCTTAGAGCAACCTGATGAGGAATGTAATTCTCATATCTGGACTGCTAATCAGGTTGAGAATGGATTTCCATCAAGCTTGGACGGCAGGCCTGCTAACTTTGAAGAAGTAGATGACTCTCCATCTGATTCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAATAGTATGGAAAGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAGGTTTGGCTGAGAGATCTCTCATGCTTAAGGAAATTGCTACCTCTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATCATGTATCACTCTATTCAGGATGTTCACACCATGGAAACCAAATTTTAATTGCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGAAGGTGATGTCTCCAAACAACCACCACATTTCATGGGAGACAGCAGTCTATGAGATTGAAGAGCAATTCATGAAGATTGCTTCTTGTGGTTCCAGATCTCTCTCACATCAGGTCCTATTTCTATGTTTTGCTTCTTAA 1728 0.3999 MGTDAIGIEGYSPLKHLRLEIEVKEGTFCICFWVYLTSSTTFPATIIQQVYSDISESAPFLVINDDKRINILPVLALHEEAPDTGNINSWTEVPHATSDFEFPLEKWVHVGCEVCPSHIHLQINGEIVGDKSLSSLLNKETDSSNLKKITLANVGGDGNSVQGYVHNFEVFPIASSIKDHHLKNPPLKLSIDESSASEIEEESDGVWSIVGGKASCRRNFSLDVVLSDASGQPVDQENEQVFASLLYADTRAPVENTTDEEAPLLASYDGIEFSSSERPSKLLLGRASFKLKISQLSSKCDNRLFFIRFFIPKLGNYPFLETYTRPIRCISRSRNTRLSTLVWKRPTPALHRLSLSQSSPMDDGSLEHLHSGHETKVNPSMKRFRVGHDKISVSVKTDPTTLEQPDEECNSHIWTANQVENGFPSSLDGRPANFEEVDDSPSDSESIGERNSPSNSMESRRYPISDMTIFKYCLAGLAERSLMLKEIATSASDKEISELAHHVSLYSGCSHHGNQILIAKRLIEDGTNLWKVMSPNNHHISWETAVYEIEEQFMKIASCGSRSLSHQVLFLCFAS. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08064 575 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 29 568 IPR001217 GO:0003700|GO:0006355|GO:0007165
Seca4g08064 575 MobiDBLite consensus disorder prediction 420 460 - -
Seca4g08064 575 Pfam Concanavalin A-like lectin/glucanases superfamily 24 175 - -
Seca4g08064 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 175 IPR013320 -
Seca4g08064 575 Gene3D - 19 180 - -
Seca4g08064 575 MobiDBLite consensus disorder prediction 446 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08064 Seca-Chr4 189596138 189604092 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Seca4g08064 Laminin_G_3 6.1e-08 CL0004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08064 4 189596138 189604092 Seca4g08064 4 189596138 189604092 ECH