Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07991 ATGGCAAGAGCAGCTTGCAGTCACCTTCACCTTGTTCCCAGTTTGGTTCATCCATTGAAATCAACCTTCTTCAGAAATAACGCTCTTTTCACCACACACTCTCCTCAGCTTTATGGGGTTCTGTCAAGGTTCTCCTTTTCTTCTTCTTCATCCAGGATAAGCATGAGCCTCAAGGCTGGCATCGTTGGCCTCCCAAACGTTGGCAAGTCCACACTCTTCAATGCCGTTGTAGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCTTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCAATGTGCTCTCTGATCTCAGTAAATCTCAGCGAGCAGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGCTGGGTAATAAGTTTTTGTCACATATTCGTGAAGTGGACTCCATACTTCAGGTTGTGCGATGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAACTTGGAACTTGTTTTCTCAGACTTAGACCAGATTGAAAAAAGACTGGATAAACTAAAGAAAGGCAAGGCAAAGGATTCACAATCTAAACTCAAGGAAGAGGCAGAAAAGTTTGCATTGGAAAAGATACGTGAGGCACTCATGGATGGAAAACCTGCACGATCTGTGACCTTAACGGATTTTGAAAGGGATGCGGTAAAGCATCTCTGCTTGCTCACAATGAAACCCATAATATATGTGGCAAATGTTGCGGAATCTGATCTAGCTGATCCTGCAATCAATAACTATGTCAATGATGTAGCAAATGTTGCATCTCAGTTGCAGTCACGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAATTGAAGAAAGGGAAGAATATCTGAAATCTCTTGGCGTTAGTGAAAGTGGTCTTGGGAACCTAATTAGGGCAACCTATGAGCTTTTGGGGCTACGAACTTATTTTACCTCTGGTGAGAAGGAGACAAAAGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATAATGACTTTGTTGCTGCTGGTTCACTTGCTGCAGCACGGGAGAAAGGACTTTTGAGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGATGTAATGTTGTTTCGATTCAATGTTTAG 1275 0.4259 MARAACSHLHLVPSLVHPLKSTFFRNNALFTTHSPQLYGVLSRFSFSSSSSRISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLNVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRLDKLKKGKAKDSQSKLKEEAEKFALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPIIYVANVAESDLADPAINNYVNDVANVASQLQSRIVTISAQVEAELTELPIEEREEYLKSLGVSESGLGNLIRATYELLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYNDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07991 424 FunFam Ribosome-binding ATPase YchF 327 423 - -
Seca4g07991 424 PANTHER OBG GTPASE FAMILY 49 423 - -
Seca4g07991 424 SUPERFAMILY TGS-like 340 421 IPR012676 -
Seca4g07991 424 PRINTS GTP1/OBG GTP-binding protein family signature 142 160 IPR006073 GO:0005525
Seca4g07991 424 PRINTS GTP1/OBG GTP-binding protein family signature 125 140 IPR006073 GO:0005525
Seca4g07991 424 PRINTS GTP1/OBG GTP-binding protein family signature 59 79 IPR006073 GO:0005525
Seca4g07991 424 PRINTS GTP1/OBG GTP-binding protein family signature 81 99 IPR006073 GO:0005525
Seca4g07991 424 Pfam 50S ribosome-binding GTPase 59 168 IPR006073 GO:0005525
Seca4g07991 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 362 IPR027417 -
Seca4g07991 424 Gene3D - 103 423 IPR012675 -
Seca4g07991 424 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 57 339 IPR031167 GO:0005525
Seca4g07991 424 FunFam Ribosome-binding ATPase YchF 168 258 - -
Seca4g07991 424 Gene3D - 57 339 IPR027417 -
Seca4g07991 424 Gene3D - 168 258 IPR023192 -
Seca4g07991 424 CDD TGS_YchF_OLA1 338 422 IPR013029 -
Seca4g07991 424 NCBIfam redox-regulated ATPase YchF 55 424 IPR004396 GO:0005524|GO:0005525|GO:0016887
Seca4g07991 424 Hamap Ribosome-binding ATPase YchF [ychF]. 56 424 IPR004396 GO:0005524|GO:0005525|GO:0016887
Seca4g07991 424 CDD YchF 59 338 IPR041706 -
Seca4g07991 424 Pfam Protein of unknown function (DUF933) 340 423 IPR013029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07991 Seca-Chr4 186335497 186345393 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07991 4 186335497 186345393 Seca4g07991 4 186335497 186345393 ECH