Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07958 ATGTCAGTGTTGATCGTGACGAGCTTGGGGGACCTGGTGATCGATTTACACACCCAAAAATGCCCCCTGACCTGCAAGAACTTCTTGAAGCTTTGCAGGATTAAGTACTATAATGGCTGTCTATTTCACACTGTTCAAAAGGATTTCACTGCTCAGACTGGCGATCCAACTGGAACTGGGACCGGTGGTGATTCCATCTACAAGTTTCTATATGGTGATCAAGCTCGGTTTTTCAGCGATGAAATTCATATTGATCTGAAGCATTCTAAGACTGGAACAGTTGCCATGGCAAGTGCGGGAGAGAATTTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGATCTCGATTACCTCGATGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTCGAATAAATGAGGCTTATGTGGATGAGAAGGGTAGACCATATAAAAATATCCGAATCAAACACACATACATCCTGGAGGACCCTTATGATGATCCTTCTCAGTTAGCTGAGTTCATTCCTGAAGCCTCACCAGAAGGAAAACCTAAAGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTGCCAATGGATGAACAATTAAACCCAGCAGAGCTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTCGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCCGAGATTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGTTATGCTTTCATAGAGTTTGAGGACAAACAGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGACGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGGAGAGATCACAAGGGTAAAGGTGGTGGTTGCTTCAAATGCGGTTCTACGGATCACATTGCCAAGGATTGCACTGGAGATGCTACAATGAAACAGCAACCTGCAAAATACATTTTGAAGGACGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCGAGATATAAAACACCAAAGGCGTGACAGGGATGACCTAGTTGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATCATATTCATAGAGGTCATAGGGATCAGGAGATGGTAGGCTCGAACAACAGAGATAGGCATGGTGATAGAGGCAGAGGGCACGATGGAAATGGAGATGATAAAACACGATCTGAAAGAGGTGTGAGAGATACAAGAGATTTGGATTCCCATGCTGACAAGAAAGACAGAGAAAAGCATATGGGAAGACATAGAGATGATGACTACAGACGAAAAGATGAGCTAGACTCTAGAAAAAGAGACATGGATGATAACTACATAGAAAGGCGGAGTAGTCGAGATGATAGGAGAAAAGCTGATACTAGCCATTTGGAGAGAAGGAATGAGAGAGATTATAGGAGAACTGAAGACAGTGGAAGGCAAGATGCGAAGATTGATTCCAGACGAAGAAAACGAAGCCCCGATGATAAAGACTACAGACATAGAAGGGAGGATGAAGATTATAAACATAGAAGGGAGGATGATAAAGATTACAAACATAGAAGGGAGGATGAAGATTACAAACATAGAAGGGAAGAACGTGGACATAGAAGACAAGATACTGAATCCGATGACTATCCTCGTAGAAGGCATCACAGTGACAGGAGATGA 1851 0.4209 MSVLIVTSLGDLVIDLHTQKCPLTCKNFLKLCRIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRRDHKGKGGGCFKCGSTDHIAKDCTGDATMKQQPAKYILKDDNAQRGGDNARYEMVFDGDNTESPRRDIKHQRRDRDDLVDKKGRKENFKDHIHRGHRDQEMVGSNNRDRHGDRGRGHDGNGDDKTRSERGVRDTRDLDSHADKKDREKHMGRHRDDDYRRKDELDSRKRDMDDNYIERRSSRDDRRKADTSHLERRNERDYRRTEDSGRQDAKIDSRRRKRSPDDKDYRHRREDEDYKHRREDDKDYKHRREDEDYKHRREERGHRRQDTESDDYPRRRHHSDRR. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07958 616 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 514 IPR035542 -
Seca4g07958 616 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Seca4g07958 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 MobiDBLite consensus disorder prediction 389 616 - -
Seca4g07958 616 Gene3D - 229 385 IPR012677 -
Seca4g07958 616 SMART rrm1_1 244 317 IPR000504 GO:0003723
Seca4g07958 616 MobiDBLite consensus disorder prediction 385 616 - -
Seca4g07958 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Seca4g07958 616 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Seca4g07958 616 SUPERFAMILY Retrovirus zinc finger-like domains 329 360 IPR036875 GO:0003676|GO:0008270
Seca4g07958 616 CDD cyclophilin_RRM 4 169 IPR035538 -
Seca4g07958 616 Gene3D - 1 173 IPR029000 -
Seca4g07958 616 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Seca4g07958 616 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Seca4g07958 616 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Seca4g07958 616 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Seca4g07958 616 CDD RRM_PPIL4 240 322 - -
Seca4g07958 616 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Seca4g07958 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Seca4g07958 616 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07958 Seca-Chr4 185547883 185554860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07958 7 166 U-box Gene Family AT5G67530 42.500 2.51e-32 130