Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07610 ATGCTTGGCAGAGCTTTGACATCTATATTGTGGGGAATGATTGCTGATCGCTATGGTAGAAAACCTGTTGTGATGATAGGGATTATTTCTGTTGTCATTTTCAACACATTATTTGGCCTAAGCACAAATTTTTGGATGGCTGTTATTATGAGATTTGTACTTGGAGGTTTAAATGGTTTGCTTGGACCAATGAAGGCTTATTCTTCTGAAATTTTTAGAGAAGAATACCAAGCTCTAGGACTCTCAACTGTTTGTGCTGCTTGGGGAGTAGGTTTAGTCTTTGGGCCAGCATTGGGAGGTTATTTGGCTCAGCCTGTACAGAAATATCCACATATATTTCCAAAGGGTTCCTTTTGGGACAAGTTTCCATACGCCTTGCCCTGCTTCGTAGTATCAGCTATTGCATTAGCAGTATTAATTGTCTGCATTTGGCTTCCAGAGACACTTCATAACCACAAAGTTGCCACTGACAACATTGAAGCTTCAGAAAATGGAAGTAGTGGAGCTGACAAAAACAAGATGATCCAAAAAGATGGAAGCCTCCTCCGCAATTGGCCCTTAATGTCATCTATCATTGTTTACTGTGTTTTTGCAATTCATGACATTGCTTTTTCAGAGGTTTTCTCATTATGGGCTGTCAGTCCTCGACGGTTGGGCGGTTTGAACTTTACAACTGATGATGTTGGTAATGTTCTTTCAATATCAGGTTTTGCTATTATTGTCTTCCAACTTGGACTATACCAATCAGTGCAAAAAATTTGTGGACCTATTGTCCTTGCTCGCATCTCAGGGGTGTTATCCATTCCCATTTTGCAAAGCTTCCCCTTCATGACAATGCTGTCAGGCTTCTCACTGTACATAGTGATATATGCTACTTCGATTCTAAAGAATCTATTCATTGAGATCATTTCTACCGGTTTATTCATTCTGCAAAATAGAGCAGTGGAACAACATCAAAGAGGGGTAGCTAATGGCATTTGTATGACTGCTATGTCAGCATGCAAAGTAATTGGCCCGGCTGGAGGAGGTGCAATATTAACATGGTCACAAAAGCGGATGAATGCTTCTTTCCTCCCAGGCCCCCATCTAGTCTTTTTTGTCCTCAATGTTGTTGAAGGAATTGGACTGTTGTTGACGTTCAAACCATTCCTGACTGTAAGGAAGGAAGCGCCCTCAGAGCAATTACACTGA 1191 0.4106 MLGRALTSILWGMIADRYGRKPVVMIGIISVVIFNTLFGLSTNFWMAVIMRFVLGGLNGLLGPMKAYSSEIFREEYQALGLSTVCAAWGVGLVFGPALGGYLAQPVQKYPHIFPKGSFWDKFPYALPCFVVSAIALAVLIVCIWLPETLHNHKVATDNIEASENGSSGADKNKMIQKDGSLLRNWPLMSSIIVYCVFAIHDIAFSEVFSLWAVSPRRLGGLNFTTDDVGNVLSISGFAIIVFQLGLYQSVQKICGPIVLARISGVLSIPILQSFPFMTMLSGFSLYIVIYATSILKNLFIEIISTGLFILQNRAVEQHQRGVANGICMTAMSACKVIGPAGGGAILTWSQKRMNASFLPGPHLVFFVLNVVEGIGLLLTFKPFLTVRKEAPSEQLH. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07610 396 Gene3D MFS general substrate transporter like domains 1 378 IPR036259 -
Seca4g07610 396 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 1 381 - -
Seca4g07610 396 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 387 IPR020846 GO:0022857
Seca4g07610 396 SUPERFAMILY MFS general substrate transporter 1 384 IPR036259 -
Seca4g07610 396 CDD MFS_SLC46_TetA_like 1 381 - -
Seca4g07610 396 PRINTS Tetracycline resistance protein signature 24 48 IPR001958 GO:0022857
Seca4g07610 396 PRINTS Tetracycline resistance protein signature 81 103 IPR001958 GO:0022857
Seca4g07610 396 PRINTS Tetracycline resistance protein signature 252 272 IPR001958 GO:0022857
Seca4g07610 396 Pfam Major Facilitator Superfamily 2 339 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07610 Seca-Chr4 173528828 173534914 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07610 4 173528828 173534914 Seca4g07610 4 173528828 173534914 ECH