Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06511 ATGCTGGTTGTTGATGTTGAGAAATTTGTTTCACCAGAGCAAGAGCCTTGGTTCTCTGTGGATGAGAAGGACCCTGTTGCTTATGCAAAAGTAGAAGTTGTTGAAGCATCAGACATGAAGCCTTCGGATCTAAATGGACTAGCGGATCCTTATGTTAAAGGTCATTTGGGCGGATACAGATTCAGGACAAAGATACAAAAGAAAACACTTAATCCAAAGTGGCACGAGGAATTTAGAATTCCCATCATAACATGGGAGTCTAGCAATATGCTTGTTATTGAAGTTCGTGACAAGGACCATTTCTATGATGATATCCTTGGGGACTGTTCTGTGAACATCAATGATTTAAGGGATGGGCAAAGACATGATATGTGGTTACCACTTCAGAATGTGAAAATGGGGAGGTTGCATTTGGCAATAACTATTCTTGAAGATAATGTAAAGGGAGTTGATACTACTTGTGAACAGGAAAAAGTAGACATTGAAGAAAGGAAAAATTCCTTTGCAAATGAGACCACTAATAAAAGTTCCTTCTCATCTGTTACATCTGAAAAATCTCAAAAGTTGGCAGATGACTATGAGCCTATAAATGTTGAAGGACAAAAGGAAACAGGAATTTGGGTTCATCACCCAGGAAGTGAAGTTTCCCAAACTTGGGAGCCAAGAAAAGGGAAGAGTCGACGCCTTGATACAGAAATTCAAAGGCAGCCTAATGACTTAGTTGGCAACTGTAATTCACCTGTATCTGAATCCTTGAACAATGACAGCAGCAGTCCGGATAACAATCCTGAAGATAAGCATAGGATGAAATCAGTTAGGAAGGGTCTGCACAAGATTGGTTCAGTATTTCGCAGGAATCAAAATAGGGAGGATAAGTCAGATTCCATTGGGGGGGAGGTTCCATCTCCACATGATAACATTAGGTCAGTCAATGCCAAAGGGGGGATTGGTGTGCACTTTGTTATGGAGGATAACATTGGTGGCTTTCCCTCTGGTAAGGTTCAAGTAGAAGGGGGATCAACTGAAGAGAATAGTCCTGATAGCCCAGCTAAGGGGCATGTCAAGGATGTGGCAAAGAATATCTTGAAACATGCAGAAAAATCAGCGCGTAGCTTAAAGCATGTTCTTTCCGGTAAATCAAGGAAATATAAAGGTGACTCACTAGTAGTTCCAGGAAGAGAAAATGAATCTGACTCTTCTTATGATGAATCTCTGTCAGTTCCATCACCCATAGATGAGAGAACTGAAGTTGTTTCCCAGACCATGGCCTCATGTAGCAATGGTTCCCCCAAACCCAGGGTGATTGTGGTTCAGTCAGTTCCACCTAACACCACTTTGGACAAGGAAGCTCCAATGAAGAACAATTGTGAAGAGGAGCCTAAAAAAGCATGCTCCCATGACAGGTCCAGTGAAGGATTTGTTAAATCTGTTGAACCGGAGCACGTTAAAGAGGAAGTGGTGGTAGATAAAAGAGATATTAGCAGTTTCTCCAACTGA 1497 0.4162 MLVVDVEKFVSPEQEPWFSVDEKDPVAYAKVEVVEASDMKPSDLNGLADPYVKGHLGGYRFRTKIQKKTLNPKWHEEFRIPIITWESSNMLVIEVRDKDHFYDDILGDCSVNINDLRDGQRHDMWLPLQNVKMGRLHLAITILEDNVKGVDTTCEQEKVDIEERKNSFANETTNKSSFSSVTSEKSQKLADDYEPINVEGQKETGIWVHHPGSEVSQTWEPRKGKSRRLDTEIQRQPNDLVGNCNSPVSESLNNDSSSPDNNPEDKHRMKSVRKGLHKIGSVFRRNQNREDKSDSIGGEVPSPHDNIRSVNAKGGIGVHFVMEDNIGGFPSGKVQVEGGSTEENSPDSPAKGHVKDVAKNILKHAEKSARSLKHVLSGKSRKYKGDSLVVPGRENESDSSYDESLSVPSPIDERTEVVSQTMASCSNGSPKPRVIVVQSVPPNTTLDKEAPMKNNCEEEPKKACSHDRSSEGFVKSVEPEHVKEEVVVDKRDISSFSN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06511 498 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 143 IPR035892 -
Seca4g06511 498 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 434 - -
Seca4g06511 498 ProSiteProfiles C2 domain profile. 12 126 IPR000008 -
Seca4g06511 498 MobiDBLite consensus disorder prediction 170 186 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 369 411 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 203 311 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 442 480 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 236 259 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 283 298 - -
Seca4g06511 498 Pfam C2 domain 30 128 IPR000008 -
Seca4g06511 498 MobiDBLite consensus disorder prediction 170 190 - -
Seca4g06511 498 SMART C2_3c 28 125 IPR000008 -
Seca4g06511 498 MobiDBLite consensus disorder prediction 220 234 - -
Seca4g06511 498 CDD C2 30 128 - -
Seca4g06511 498 MobiDBLite consensus disorder prediction 451 480 - -
Seca4g06511 498 PRINTS C2 domain signature 44 56 IPR000008 -
Seca4g06511 498 PRINTS C2 domain signature 68 81 IPR000008 -
Seca4g06511 498 PRINTS C2 domain signature 91 99 IPR000008 -
Seca4g06511 498 MobiDBLite consensus disorder prediction 386 400 - -
Seca4g06511 498 Gene3D C2 domain 14 144 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06511 Seca-Chr4 131307866 131314766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06511 21 140 Lipid Metabolism Gene Families AT3G61300 31.200 5.00e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06511 4 131307866 131314766 Seca4g06511 4 131307866 131314766 ECH