Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03432 ATGTCAGAACTTCAAGTTGTTCAACTCAACCAATTAAGGGAAATTTTTGCAAGATTTGACATGGATTCAGATGGCAGCCTAACCATTTTAGAACTCGCAGCTCTTCTACGGTCGTTGGGGCTGAAGCCTTCAGGTGACCAAATCCATGTGTTGTTAGCCAACATAGACTCAAATGGCAATGGCTTTGTGGAGTTTGATGAGTTGGTGGATGCAATATTACCTGAAATGAGTGCAGAGACATTGCTGAATCAAGAGCTTCTCATAGGGGTGTTTAAGTGCTTTGATCGTGATGGGAATGGATATATATCAGCAGCAGAGTTAGCCGGAGCAATGGCCAAAATGGGTCAGCCCCTTACATATAGAGAGCTCAGAGAGATGATCTCAGAGGCTGACACAGATGGTGATGGTGTAATTAGTTTCAATGAGTTTGCATCTGTAATGGGTAGGTCAGCATCTGATTTCTTAGGCTTTGCATTGTGGTAA 483 0.4306 MSELQVVQLNQLREIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANIDSNGNGFVEFDELVDAILPEMSAETLLNQELLIGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELREMISEADTDGDGVISFNEFASVMGRSASDFLGFALW. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03432 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Seca4g03432 160 FunFam HLH domain-containing protein 83 154 - -
Seca4g03432 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Seca4g03432 160 FunFam Probable calcium-binding protein CML15 1 77 - -
Seca4g03432 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Seca4g03432 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Seca4g03432 160 PANTHER CALCIUM BINDING PROTEIN 84 147 - -
Seca4g03432 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Seca4g03432 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Seca4g03432 160 SMART efh_1 11 39 IPR002048 GO:0005509
Seca4g03432 160 SMART efh_1 122 150 IPR002048 GO:0005509
Seca4g03432 160 SMART efh_1 47 75 IPR002048 GO:0005509
Seca4g03432 160 SMART efh_1 86 114 IPR002048 GO:0005509
Seca4g03432 160 CDD EFh 87 147 IPR002048 GO:0005509
Seca4g03432 160 Gene3D - 1 151 - -
Seca4g03432 160 SUPERFAMILY EF-hand 8 147 IPR011992 -
Seca4g03432 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Seca4g03432 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Seca4g03432 160 Pfam EF-hand domain pair 88 147 IPR002048 GO:0005509
Seca4g03432 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03432 Seca-Chr4 59888297 59888779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03432 8 159 EF-hand Containing Proteins AT1G18530 75.658 4.90e-83 239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03432 4 59888297 59888779 Seca4g03432 4 59888297 59888779 ECH