Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03283 ATGAAGCTTCATTTTAGCAAGATCTACTCATTTGCGTGTGGCAAAACAACTTTTAGGAGAGATCATTCACAGATTGGGGGGCTTGGTTATTCCAGGGTGGTCCTATGCAATGAACCAGATGGCTCTGAGGCAGAGTTTAGGTATTACGCAGATAATTCTGTCAGGTCCACAAAATATACTGTTGCCACTTTCTTGCCTAAGTCACTGTTTGAGCAGTTTAGGAGGGTAGCTAATTTCTATTTCTTGGTAGCTGGTATCTTAGCCTTCACAAAGCTTGCTCCTTATACAGCTGTTAGTGCTGTCTTTCCTCTGTGCATCATCATTGGGGGGACTATGTTGAAAGAGGGTATTGAAGATTGGCGTCGGAAAAAGCAGGATATTAAGGTGAACAGTAGAAGAGTTATGTTTCATAAAGGTGATGGAATTTTTGAATATACGGAGTGGAAGAATCTCAGGGTGGGGAATATTGTGAAGATAAAGAAGGATGAATTCTTCCCTGCTGACCTCCTCCTGCTTTCATCTAGTTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGTGAGACAAATTTGAAGTTAAAACAAGGGTTGGATGTAACTTCTTCCTTAAATGAGGACTTCAAGTTCCACAATTTTAAAGCTGCGGTCAAATGTGAAGACCCAAATGCAAATTTGTACTCATTTGTCGGGAGCATGGAGTTTGAAGAGCAAAAATGTGCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCCAAACTTCGTAATACCGACTACATATTTGGAGCAGTCATCTTTACTGGTCATGATACAAAGGTTATTCAAAATGCCACTGATCCCCCTTCAAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATCTACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTCTCTTTGGCATTGCAACTAAACGTGACCTGGACAATGGGAGGATGAAAAGATGGTATCTAAGACCAGATGATTCCACCATTTTTTTCGATCCAAAAAGATCTACTGCAGCTGGAATATTTCATTTTTTGACAGCCTTAATGTTGTATAGCTTCTTCATTCCCATCTCCTTGTATTTCTCAATAGAAATTGTTAAAATCCTTCAGAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCAGACAGACCAGCTCGCGCTCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTATTGCTGGAGTAGCTTATGGCCGTGGTGTTACAGAGGTTGAGCAAGCCATCGGTAGAAGTTATGGTTCACCTATTATTCATGAGCATGTTAATAGGTTAAAATCAGATGAAATCAGGGAATCTCTTGATAGAAAAGTACCCATCAAAGGTTTTAACTTCATAGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTCATGCAGATGTAATACAGAAGTTTTTTCGCTTATTGGCTGTCTGTCATACTGCCGTACCAGAAGTGGATGAAGATACAGGAAAGGTCTCATATGAAGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTGCAAGAGAAGTTGGTTTTAAATTCTATAAAAGGACTCAGACTAGTTTATCAATGTATGAGTTGGATCCAGTTTCTGGTGATGAAGTTGAAAGGATGTACAAGCTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTGATAGTGAAAGATGAGGAAGGGAGAATTTTGCTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACTTTGGAACATGTGCATGAATATGCTGATGCAGGTCTAAGGACCCTAATTCTGGCATACCGTGAACTTGATGAAGAAGAGTACAAGGAGTTTGATAATAAATTTTCTGAAGTAAAAAATTTAGTTACTATAGATCGGGAAATGCTGATTGAGGAAGTATCAGATAAGATTGAGAGGAATCTATTCCTTCTGGGTGCCACAGCTGTAGAGGACAAGCTCCAAAATGGGGTATTTTAG 2130 0.3934 MKLHFSKIYSFACGKTTFRRDHSQIGGLGYSRVVLCNEPDGSEAEFRYYADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLAPYTAVSAVFPLCIIIGGTMLKEGIEDWRRKKQDIKVNSRRVMFHKGDGIFEYTEWKNLRVGNIVKIKKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLNEDFKFHNFKAAVKCEDPNANLYSFVGSMEFEEQKCALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNATDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSILFGIATKRDLDNGRMKRWYLRPDDSTIFFDPKRSTAAGIFHFLTALMLYSFFIPISLYFSIEIVKILQSIFINQDIHMYYEEADRPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEQAIGRSYGSPIIHEHVNRLKSDEIRESLDRKVPIKGFNFIDERIMNGNWVNEPHADVIQKFFRLLAVCHTAVPEVDEDTGKVSYEAESPDEAAFVIAAREVGFKFYKRTQTSLSMYELDPVSGDEVERMYKLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKNGREFEEKTLEHVHEYADAGLRTLILAYRELDEEEYKEFDNKFSEVKNLVTIDREMLIEEVSDKIERNLFLLGATAVEDKLQNGVF. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03283 709 FunFam Phospholipid-transporting ATPase 537 695 - -
Seca4g03283 709 Gene3D - 110 281 - -
Seca4g03283 709 Gene3D - 471 702 IPR023299 GO:0000166
Seca4g03283 709 Pfam Cation transport ATPase (P-type) 517 621 - -
Seca4g03283 709 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 412 IPR023298 -
Seca4g03283 709 ProSitePatterns E1-E2 ATPases phosphorylation site. 420 426 IPR018303 -
Seca4g03283 709 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 486 663 IPR023299 GO:0000166
Seca4g03283 709 NCBIfam phospholipid-translocating P-type ATPase 49 708 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g03283 709 SUPERFAMILY Calcium ATPase, transduction domain A 137 278 IPR008250 -
Seca4g03283 709 SUPERFAMILY HAD-like 406 430 IPR036412 -
Seca4g03283 709 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 33 708 - -
Seca4g03283 709 Pfam Phospholipid-translocating ATPase N-terminal 36 99 IPR032631 -
Seca4g03283 709 FunFam Phospholipid-transporting ATPase 110 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03283 Seca-Chr4 56531641 56539682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03283 3 708 Primary Pumps ATPases AT1G68710 73.692 0.0 1110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03283 4 56531641 56539682 Seca4g03283 4 56531641 56539682 ECH