Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03260 ATGCAGGAAACTAAGGACCCTGCAATTAAGCTCTTCGGCCAGAAGATTCCCTTTCCCGGGGAAGCAGAGGCTCCTGCCATTGCCAGTGACGAAACTACCTCGCCTGCTGCCATGGATGTCGATAAAGAGGAAGAAAAAGAAGAAGAAGACAGAGACGTTGGTGAGTCAGATCCTGAAGATGAGAATGACCTAGGAGACAAGGATCCTCGAGCTGAAAAAGTTACTGAGACAACGAAAGAGGCTGATCCTCCTCCAAATGGTGCAGAGACTAAGAAGAATTCAGGTGAGGGTATTCAGAACCCAAAGACACCTTCCATAGATGAAGAAGCTGCAAAATCAAAGAACAACGAGCAAAGTGATGAAAACAACAACAACTCTCAAGAGAAACCACTGAAGAAACCAGATAAAATACTCCCATGTCCACGCTGCAAAAGCATGGACACCAAGTTCTGTTACTACAACAACTACAACGTCAATCAGCCACGCTATTTCTGCAAAGCATGTCAAAGATATTGGACTGCAGGTGGTACCATGAGGAATGTTCCAGTTGGGGCAGGGAGAAGGAAGAACAAGAACTCTTCCTCACACTACCGCCACATCACCATCTCTGAGGCTCTTCAAGCAGCTAGAATTGGTGCTCCAAATGGAACTGCTCATCTTCCCACTTTGAAGACCAATGGTAGAGTCCTCAGCTTTGGATTGGATCCACCAATCTGTGATTCCATGGCATCTGTCTTGAACCTTGCAGAGAAAAAGGCTCCTAATGGCACACGAAATGGGTTTCATACCATTGAGGAACAAAGAATCCCTGTTCCTTGCAAAAGTGGGGAAAATGGTGATGACTGCTCAAGTGTATCTTCCATCACAGTTTCAAATTCCATGGAGGAAAGTGGCAAAACCACGTCTCAAGAATCCTTACCACTACGGAATAATGGTTTCCTTCCTCAAGTTCCATGCATTTCTAGTGTTCCTTGGCCTTATCCTTGGGGTTCTGGAATTCCCCCACCAACTGCTTTGTGTCCTCCTCCAGGATTTCCCATGTCATTCTACCCTGCTGCCTTTTGGAATTGTGGGGTACCAGCGAATTGGAATGTTCCATGGTTTTCCCCTCACCCCTCTGCTCCAACCCCAAGGTCTCCAAGCTCTGGTCCAAATTCACCAACACTTGGGAAGCACTCAAGGGATGATGACATGGCTAAACAAGACCATTTGCAGAAAGAAGAACCACCAAGACAGAAAAACGGTTGTGTTTTGGTCCCCAAAACTCTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTTGGAATTAAGAATGAGTGTGTGAATGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGGAGAGAAGAATCATGTTGTTGAAACATCTCCAGTGTTGAGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACTCCTGA 1473 0.4569 MQETKDPAIKLFGQKIPFPGEAEAPAIASDETTSPAAMDVDKEEEKEEEDRDVGESDPEDENDLGDKDPRAEKVTETTKEADPPPNGAETKKNSGEGIQNPKTPSIDEEAAKSKNNEQSDENNNNSQEKPLKKPDKILPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHITISEALQAARIGAPNGTAHLPTLKTNGRVLSFGLDPPICDSMASVLNLAEKKAPNGTRNGFHTIEEQRIPVPCKSGENGDDCSSVSSITVSNSMEESGKTTSQESLPLRNNGFLPQVPCISSVPWPYPWGSGIPPPTALCPPPGFPMSFYPAAFWNCGVPANWNVPWFSPHPSAPTPRSPSSGPNSPTLGKHSRDDDMAKQDHLQKEEPPRQKNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVNGGGMFKAFQSKKGEKNHVVETSPVLRANPAALSRSLNFHENS. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03260 490 MobiDBLite consensus disorder prediction 272 309 - -
Seca4g03260 490 MobiDBLite consensus disorder prediction 372 416 - -
Seca4g03260 490 MobiDBLite consensus disorder prediction 1 138 - -
Seca4g03260 490 Pfam Dof domain, zinc finger 135 192 IPR003851 GO:0003677|GO:0006355
Seca4g03260 490 MobiDBLite consensus disorder prediction 63 79 - -
Seca4g03260 490 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
Seca4g03260 490 PANTHER CYCLIC DOF FACTOR 2 1 490 IPR045174 GO:0003700|GO:0006355
Seca4g03260 490 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
Seca4g03260 490 MobiDBLite consensus disorder prediction 279 309 - -
Seca4g03260 490 MobiDBLite consensus disorder prediction 42 62 - -
Seca4g03260 490 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03260 Seca-Chr4 56231824 56234463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03260 1 488 C2C2-Dof Transcription Factor Family AT3G47500 50.397 6.80e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g03260 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03260 - - gsj:114409713 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03260 4 56231824 56234463 Seca4g03260 4 56231824 56234463 ECH
Seca2g00587 2 8259738 8263354 Seca4g03260 4 56231824 56234463 ECH