Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02629 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGGAGTGGTTAAACCTATGGAAGGAGGTTCAAATAAGCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAAAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACTAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAATGTTCCTGTTGGTGGTGGTTCTAGAAAGAACAAGAGATCCACTCCATCATCATCATCAGCACCATCAGCATCAACATCCTCCACAGCACCACCACTTCCATCATCAACAAAGAAGCTTCCTGATCTGACTACACCAAATTTCCCTCAATCTGCTTCTCAAAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATATCCACCACCTGAGGACTATAACACCATGTCTAAATTTATTGAGGTTCCTTACAACACTGAAGATCACAAGACTTCATCTTCTGCTCATCATCATCAGTTGTCTGCTATGGAGCTTCTTAAAACTGGGATAACTTCCTCAAGGGGTTTAAATTCTTTCATGCCTATGTCTTTATCAGATTCTAGCTGCACAATGTATAATTCAACTGGGTTTCCTTTACAAGACTTTAATAAGCAGCCTGGTCTTAACTTCAGTCTTGAAGGGTTTGAAAATGGCTTTGGGGGTCTCCATGGAATTCAAGAAGGTGGTGCTGCTGGTGCTGCTTCTGGTGCAAGGATCTTGTTTCCTGTAGAGGATTTGAAGCAGCAAGTTCCAAACACAGCTGAGTTTGAGCAGAATAGAAGTCAAGGAGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 903 0.4308 MDTAQWAQGNIGGVVKPMEGGSNKPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSSSSAPSASTSSTAPPLPSSTKKLPDLTTPNFPQSASQNPKIHQGQDLNLAYPPPEDYNTMSKFIEVPYNTEDHKTSSSAHHHQLSAMELLKTGITSSRGLNSFMPMSLSDSSCTMYNSTGFPLQDFNKQPGLNFSLEGFENGFGGLHGIQEGGAAGAASGARILFPVEDLKQQVPNTAEFEQNRSQGDSTGYWNGMLGGGSW. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02629 300 MobiDBLite consensus disorder prediction 89 142 - -
Seca4g02629 300 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g02629 300 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca4g02629 300 MobiDBLite consensus disorder prediction 276 290 - -
Seca4g02629 300 MobiDBLite consensus disorder prediction 276 300 - -
Seca4g02629 300 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca4g02629 300 MobiDBLite consensus disorder prediction 78 152 - -
Seca4g02629 300 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Seca4g02629 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 193 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02629 Seca-Chr4 45093400 45095313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02629 27 300 C2C2-Dof Transcription Factor Family AT3G61850 46.341 5.23e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g02629 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02629 - - lja:Lj0g3v0363619.1 429.483