Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02494 ATGTTCCCACAAACACAAAGACATAGTGCTAGTTGTAACGGCCTAGAGCAGATCATGTTTCATCATCAGCTCCCATCTTCTTCTCCTATGCCAATTCCAACCCCAATGGACAGATCAAGTTCTTCAAGGTGGAAGCCCAGCATTGAGGTAGCACCAAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTGTCACAGCCTAGATACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGTGGCTCCCTTCGGAACGTCCCTGTTGGTGGTGGCTGCCGCAAAAGCCGCCGCGGAAAATCCGCAAAGCACCCCAAAACTGAAGGTAGCTTCCATGGGAGTGATGATAGAGAGTCATCAATAGGTGATCAACACAACCAAACCAATGGCCATGTGTCTTGTGATATAGACATGGCTCTTGTGTTTGCCAAATTCTTGAACCAAGAGAAGAGTAATATTGGTGAGGAACAATTTGAGAGTGAGGCTACTAACAATGGGTCAACTTCTTCCAATGATGCAGTGATCCAGCCTCAGAAGAAGTCCTCTGATGAAGCAGTGGGGGACACACTGGAAGAATTGAGTTTGAGTGGGATTGATGAGCTGGAGGGATATTTTGGGGCAGGTGGTTGTGATGATGAAGATGTGGTCCAAGATGTTCTCTGGCCTCATGATGCTACCATGTCTTCTTCTGTTATGTGGCAAACACCATCCATGATGCAAACGCAGTTGGAGGACTTGGAGTTGGAGTTGGAGTACTCGTTGCCATTCAATGAGGATGGTCAATTATTACCGATTAGTTCAACTTCTTCTACCGTGAATTTAATAAGCGACAGTTGGAGTTCCTTTGATTTTTCAACCATGGAAGTCTTCTCATCAAGACCCTAA 909 0.4631 MFPQTQRHSASCNGLEQIMFHHQLPSSSPMPIPTPMDRSSSSRWKPSIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRGKSAKHPKTEGSFHGSDDRESSIGDQHNQTNGHVSCDIDMALVFAKFLNQEKSNIGEEQFESEATNNGSTSSNDAVIQPQKKSSDEAVGDTLEELSLSGIDELEGYFGAGGCDDEDVVQDVLWPHDATMSSSVMWQTPSMMQTQLEDLELELEYSLPFNEDGQLLPISSTSSTVNLISDSWSSFDFSTMEVFSSRP. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02494 302 MobiDBLite consensus disorder prediction 96 136 - -
Seca4g02494 302 MobiDBLite consensus disorder prediction 164 194 - -
Seca4g02494 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 184 IPR045174 GO:0003700|GO:0006355
Seca4g02494 302 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Seca4g02494 302 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Seca4g02494 302 MobiDBLite consensus disorder prediction 111 130 - -
Seca4g02494 302 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Seca4g02494 302 MobiDBLite consensus disorder prediction 164 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02494 Seca-Chr4 42510580 42511488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02494 39 155 C2C2-Dof Transcription Factor Family AT3G52440 59.504 3.72e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca4g02494 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02494 - - gmx:100806008 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02494 4 42510580 42511488 Seca4g02494 4 42510580 42511488 ECH