Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02299 ATGCAGAGCACTCTGTTTCTCCTTTTGCTTCTTCAAGCTTTGATCACTGCGAGCTGTAAATCCACCATTGAGCCATGCACAAACTCAGACTCTTGCAATGCACTGTTAGGTTACACGCTTTACACGGACCTTAAGGTCTCTGAGGTAGCTTCCCTCTTCCAAATCGACCCTATCGCTCTTCTCACCGCCAATGCCATTGATATTTCCTACCCTGACGTGGAACACCACATCCTTCCTTCGAAGCTTTACCTCAAAATCCCCATCTCATGTTCCTGCGTTGATGGGATTCGTAAATCGGTGTCTACCAATTACAAGACGCGTCCTTCAGATACTCTTTCTTCCATTGCTGACTCAATCTATGGGGGTTTGGTCTCTGCTGATCAACTCAGAGAGGCCAATTCCATAACTGACCCTTCAGTGCTTGATGTAGGGCAGAACCTTGTGGTGCCTCTTCCTTGCACTTGCTTCAATGGTTCTGATAACTCTTTGCCAGCAATTTACCTCTCCTATGTGGTTCAGCCGCTTGATAGTTTGGCTTCAATTGCTGCTAGGTATTTCACTACTCTTACTGATTTGATGAATGTTAATGCCATGGGGAGCACAGCTATCTCTGATGGTGATATCCTTGCTATTCCAATACCAGCTTGTGCTTCAAATTTTCCAAAATATGCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCACTGTGTACAGTGTAGCTGTGGACCACGAAACCTAAATTTGTACTGTATGCCAGCTTCTCTAGCTGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAATCTCATGCTAGGGAATGTTACAGTGCAACAGAGTAGTGCTGGTTGCAATGTTACTTCTTGCAGTTATGATGGTATTGTTAATGGCACCATAGCAACAATGTTGTCCGCATCCCTTCAGCCTAGATGTCCAGGTCAGTATGCTGCAGCCATACACACATGTAGAGAGAGCATGCAAAAGCATTGCAGAATGGCATTCTTGACTTTAAATAAATTATTGTTTTTTATTTTGCCTTACATTCTGGATGATTTATCTACTGAGATGTTAGTTGACCTGGTTCACATTATGTGGGAAGATTCAGTACTACTAGGTCTTCTATTTAGAATTTTAGATACTTGA 1161 0.4289 MQSTLFLLLLLQALITASCKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKTRPSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPLDSLASIAARYFTTLTDLMNVNAMGSTAISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQSSAGCNVTSCSYDGIVNGTIATMLSASLQPRCPGQYAAAIHTCRESMQKHCRMAFLTLNKLLFFILPYILDDLSTEMLVDLVHIMWEDSVLLGLLFRILDT. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02299 386 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 320 - -
Seca4g02299 386 Gene3D LysM domain 96 156 IPR036779 -
Seca4g02299 386 Pfam LysM domain 170 212 IPR018392 -
Seca4g02299 386 Pfam LysM domain 104 150 IPR018392 -
Seca4g02299 386 SUPERFAMILY LysM domain 103 151 IPR036779 -
Seca4g02299 386 ProSiteProfiles LysM domain profile. 168 211 IPR018392 -
Seca4g02299 386 CDD LysM 104 149 IPR018392 -
Seca4g02299 386 Gene3D LysM domain 157 220 IPR036779 -
Seca4g02299 386 SUPERFAMILY LysM domain 168 213 IPR036779 -
Seca4g02299 386 CDD LysM 169 211 IPR018392 -
Seca4g02299 386 SMART LysM_2 103 150 IPR018392 -
Seca4g02299 386 SMART LysM_2 169 212 IPR018392 -
Seca4g02299 386 ProSiteProfiles LysM domain profile. 102 149 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02299 Seca-Chr4 39140057 39143163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02299 5 322 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 75.155 5.89e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02299 - - gmx:100808966 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02299 4 39140057 39143163 Seca4g02299 4 39140057 39143163 ECH