Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01518 ATGGAAAGAACAAAGTCATCCCTTGCACAAATTCAGCCTCCCACTTATGGAAACTTAGTCACTATTCTCAGCATCGATGGAGGAGGTATTAGGGGCATTATTCCCGCAACTATTCTCACTTTCCTTGAAACACAACTTCAGGAGTTGGATGGTGAGTCAGCGAGGCTTGCAGATTACTTTGATGTGATTGCAGGAACAAGCACTGGTGGTCTTGTAACCGCCATGTTAACTGCTCCAAATGATCAACAACGTCCACTTTTTGCAGCCAAGGATATCAATCCTTTTTACTTAGAACACAGCCCTAAGATTTTCCCACAACACAGGTATATATATCTACACAAATATTTCTCGTTGTTTAAGCTATCATTAAGAGGACCAAAATACGATGGAAAATACCTTCATAAGGTCGTGAGAGAGAAGCTGGGGGAAATTCGTCTGCATGAGACACTCACAAATGTTGTGATTCCCACATTTGATATCAAAACATTGCAACCAACGATTTTCTCTTCTTATATGATAAACAAGTCTCCATGCTTGGATGCTCGACTCTCTGACATATGTATCAGCACCTCTGCTGCACCTACTTATCTTCCCACTTACAGCTTCAAGAATCAAGACTCGAATGGAAACGTTCAGGAATTTAACCTCACTGATGGCGGCGTTTGTGCAAATAACCCTACCTTAGTGGCTGTGAATGAAGTAACCAAGCAGATGATTAATGAAAATCCTGACTTCTTTTCCATCAAGCCTGTGGAATACAGTCGATTCTTGATAATATCATTGGGCACAGGGACACCTAAGAATGAACAAAAGTTCAATGCCAAAATGGCAGCCAAATGGGGTTTATTGGATTGGTTAACACACAGTGGTTCTACTCCCTTAATTGATGTGTTTAGTCAATCCAGTGCTGATATGGTTGATTTCTATCTTTCTACCGTAACTCAAGCGTTTCATTCACAAGATAACTACCTCCGTATACAAGATGATACATTGACCGGTACGGACTCGTCGGTAGATATTGCCACAAAAGAGAATTTGGAAAAATTGGGACAAATTGGTGAAAGGCTGTTGAAGAAACCAGTATCTAAGGTCAATTTAGAGACTGGTTTGTTTGAGCCAATACAAAATGGGGAGACCAATGAAGATGCTCTCAGAAGGTTTGCAAAAATACTTTCACAGGAGAGGAGGCTCCGAGAATTGAAATCCCCTCGCACTAAGATTCAGCCTCCCACTTATGGAAACTTAGTCACAATTCTCAGCATCGATGGCGGTGGTATTAGGGGCATTATTCCTGCAACCATTCTCGCTTTCCTTGAAACTCAACTTCAGGAGTTGGATGGTGAGTCAGCGAGGCTTGCAGATTACTTTGATGTGATTGCAGGAACAAGCACTGGTGGTCTTGTAACCGCCATGTTAACTGCTCCAGATCACAATCAACGTCCACTTTTTCCGGCCAAGGATATCAAGCCTTTTTACTTGGAACACTGCCCCAAGATTTTCCCACAACACAGGTATATGGACTTTTTGGGGATAGGAAAGTTGTTTAGATCATTAAGAGGACCAAAATACGATGGAAAATACCTTCATCAAGTTGTGAGGGAGAAGTTGGGAGAAATTCGTCTGCATGAGACGCTTACCAATATTGTGATTCCCACATTTGATATAAAGACATTGCAACCAACCATTTTCTCTTCTTATAAGATAAAGAAATCTCCATGTTTGGATGCTCGACTCTCTGACATATGCATCAGCACCTCCGCTGCACCTACTTATCTTCCCGCTTACATCTTCAAGAATCAAGACTCTAATGGAAATGTTCAGGAATTCAACCTTACTGATGGCGGTGTTTGCGCAAATAATCCCACTTTAGTAGCCGTGAATGAAGTAACCAAGCAGATGATTAATGAAAATCCTGACTTCTTTTCTATCAAGCCTGTGGAATACAGTCGATTCCTAATAATCTCACTAGGCACTGGAACTCCCAAGAATGAAGAGAAGTTTAATGCAAAAATGGCAGCTAAATGGGGTCTATTGGATTGGTTAACACATAGTGGTTCTACTCCTTTAATTGACGTGTTTAGTCAATCCAGTGCTGATATGGTTGATTTCCATCTTTCTACCGTAACTCAAGCTTTTCATTCACAACATAACTACCTCCGTATACAGGATGATACGTTGACTGGTACGGACTCTTCGGTTGATATTGCCACAAAAGAGAATTTGGAAAATTTGGGCCAGATTGGTGAAAGGTTGTTGAAGAAACCAATATCTAAGGTCAATTTAGAGACTGGTCTATTTGAACCAATACAAAATGGGGAGACTAATGAAGATGCTCTTAGAAGGTTTGCAAAATTACTTTCACAAGAAAGGAGGCTCCGAGAATTGAAATCCCCTCGCACTAACAAGGCCTTAATATAG 2418 0.4098 MERTKSSLAQIQPPTYGNLVTILSIDGGGIRGIIPATILTFLETQLQELDGESARLADYFDVIAGTSTGGLVTAMLTAPNDQQRPLFAAKDINPFYLEHSPKIFPQHRYIYLHKYFSLFKLSLRGPKYDGKYLHKVVREKLGEIRLHETLTNVVIPTFDIKTLQPTIFSSYMINKSPCLDARLSDICISTSAAPTYLPTYSFKNQDSNGNVQEFNLTDGGVCANNPTLVAVNEVTKQMINENPDFFSIKPVEYSRFLIISLGTGTPKNEQKFNAKMAAKWGLLDWLTHSGSTPLIDVFSQSSADMVDFYLSTVTQAFHSQDNYLRIQDDTLTGTDSSVDIATKENLEKLGQIGERLLKKPVSKVNLETGLFEPIQNGETNEDALRRFAKILSQERRLRELKSPRTKIQPPTYGNLVTILSIDGGGIRGIIPATILAFLETQLQELDGESARLADYFDVIAGTSTGGLVTAMLTAPDHNQRPLFPAKDIKPFYLEHCPKIFPQHRYMDFLGIGKLFRSLRGPKYDGKYLHQVVREKLGEIRLHETLTNIVIPTFDIKTLQPTIFSSYKIKKSPCLDARLSDICISTSAAPTYLPAYIFKNQDSNGNVQEFNLTDGGVCANNPTLVAVNEVTKQMINENPDFFSIKPVEYSRFLIISLGTGTPKNEEKFNAKMAAKWGLLDWLTHSGSTPLIDVFSQSSADMVDFHLSTVTQAFHSQHNYLRIQDDTLTGTDSSVDIATKENLENLGQIGERLLKKPISKVNLETGLFEPIQNGETNEDALRRFAKLLSQERRLRELKSPRTNKALI. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01518 805 Pfam Patatin-like phospholipase 23 230 IPR002641 GO:0006629
Seca4g01518 805 Pfam Patatin-like phospholipase 419 625 IPR002641 GO:0006629
Seca4g01518 805 CDD Pat17_isozyme_like 413 764 - -
Seca4g01518 805 FunFam Patatin 12 403 - -
Seca4g01518 805 SUPERFAMILY FabD/lysophospholipase-like 414 765 IPR016035 -
Seca4g01518 805 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 231 IPR002641 GO:0006629
Seca4g01518 805 PANTHER XYLOSE ISOMERASE 5 399 - -
Seca4g01518 805 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 419 626 IPR002641 GO:0006629
Seca4g01518 805 FunFam Patatin 408 798 - -
Seca4g01518 805 Gene3D Cytosolic phospholipase A2 catalytic domain 10 403 - -
Seca4g01518 805 Gene3D Cytosolic phospholipase A2 catalytic domain 405 798 - -
Seca4g01518 805 CDD Pat17_isozyme_like 17 369 - -
Seca4g01518 805 SUPERFAMILY FabD/lysophospholipase-like 18 370 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01518 Seca-Chr4 24521472 24530057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01518 399 800 Miscellaneous Gene Families AT2G26560 64.428 0.0 541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01518 4 24521472 24530057 Seca4g01518 4 24521472 24530057 ECH