Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01499 ATGTCTAGTCGGAGTGAACACCAATCGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAATTGGCAAACGAGAAAATCGAGAAGCCGGATGTTGTAATTGTACACGGCCAAGCTAGCGAGAACAAGAAAGGAGAGGATTTCACGCTGGTAAAGACGGAATGCCAAAGGGTGGTGGGAGATGGGGTCTCTACATATTCTGTTTTTGGGCTTTTCGATGGACACAATGGACCGGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTCCAGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAACTGAAAGCACAAACATCGGGAACAACTGTAACTTTTGTAATTATAGAAGGATGGGTTATAACAGTAGCATCAGTTGGTGATTCTCGTTGCATACTTGAACCTTCTGAAGGTGGAATATATTACTTGTCAGCAGATCATAGACTAGAAAGCAACGAAGAGGAGAGGGTGCGCATCACTTCTAGTGGGGGTGAAGTTGGTCGGCTAAATACAGGTGGAGGTGCACAGGTTGGTCCATTGAGATGTTGGCCAGGTGGCTTGTGTCTCTCCCGATCTATTGGTGATATGGATGTTGGCGAATATATTGTCCCTGTACCATACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGCTTATTATCAGCAGTGATGGGGTCTGGGATGCTTTAACTGCAGATATGGTCCTTGATTGTTGTCGTGGCATGTCAGCGGAGGCTGCAGCACCACATATTGTGAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGACACAACTTGCATCGTTGTTGATATATTAGCCCATGAGAAGCCACCTACTTCTGTTCCAACACAGAAGAAACCAGTAAAAGGAATGTTGAAGTCCATTTTCCGCAAAAAGTCCTCTGAATCATCTAATATTTTCAAAGAATACTTGGAGCCAGATGTGGTACGGGAACTATATGAGGAAGGATCTGCTTTTCTTTCAGAGAGGTTTGCTTTTGTAATAAGTGTTATATGCAGGTTAGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTCGTGTGTGCAGTGTGTCAAGCAGAGATTAAACCAGGGGAGGGTATTTCAATACATGAGGGTGCGCTGAACCCGGCAAGATTGCGTCCCTGGGATGGACCTTTCCTTTGCATAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAACGAACATCAGATAGACTAAGCAGCGGAAGTGACTAA 1317 0.445 MSSRSEHQSVPLSVLLKRELANEKIEKPDVVIVHGQASENKKGEDFTLVKTECQRVVGDGVSTYSVFGLFDGHNGPAAAIYAKENLLNNVLSAIPPDLNRDEWVAALPRALVAGFVKTDKDFQLKAQTSGTTVTFVIIEGWVITVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGAQVGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALTADMVLDCCRGMSAEAAAPHIVKEALQAKGLRDDTTCIVVDILAHEKPPTSVPTQKKPVKGMLKSIFRKKSSESSNIFKEYLEPDVVRELYEEGSAFLSERFAFVISVICRLETKYPLCNMFKLFVCAVCQAEIKPGEGISIHEGALNPARLRPWDGPFLCISCQEKKEAMEGKRTSDRLSSGSD. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01499 438 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Seca4g01499 438 Gene3D - 25 301 IPR036457 -
Seca4g01499 438 CDD PP2Cc 40 295 IPR001932 -
Seca4g01499 438 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Seca4g01499 438 Pfam Protein phosphatase 2C 59 281 IPR001932 -
Seca4g01499 438 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
Seca4g01499 438 SMART PP2C_4 23 293 IPR001932 -
Seca4g01499 438 SMART PP2C_SIG_2 56 295 IPR001932 -
Seca4g01499 438 FunFam probable protein phosphatase 2C 12 34 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01499 Seca-Chr4 24210804 24216191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01499 1 438 PP2C-type Phosphatase Gene Family AT1G47380 76.591 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01499 4 24210804 24216191 Seca4g01499 4 24210804 24216191 ECH
Seca4g01499 4 24210804 24216191 Seca4g01499 4 24210804 24216191 PCT