Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01470 ATGCAAGGGCAGAGAGGTACAATTGGTTCCATGTCTGAAGCCTTAGAATTTGATTGTGGATCTACATCAAGTAATGCTACTGCAGATCAGCAGATTTGCTGGAATCATGTGCGGAATCCTGCAGAAAATCAAATACCTGATTATATACTCTCTCCTAGTGATATAAACCCATCTTATATGAATTCAATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGGGCCAAGTTCCAGTAATGCGCCAAATGAACTTGACAATAACGGGCAGAAAAGAGAGCTCGGATGGTCATCATCAATAAGTGCTGGTGCATTAGCTGGTCCAAGGCTAGAAGACAGGCGCCTTGAACCAAGCAATGCTCTTTCGCTGAACAATGTCAATACTGGTCCGGTGTATATGCGCAACTCCAATTCTCATTTGATGTCACAGAATCTAAACTTAAATGCAGGTTTAGCAGACAGTGGCTGTGATGATAGTCAACATCTGGAGCACCCTAACTTACACAAGTCTAGTGAATCAGTAAATGAGTGCAGTCCACCTAATATTGGTTCTGGTTCTTTTCCGCTTCCTTCTGGAAATAATGGCTTTCTGGTAGAAGATACTGATGGTAGGCCAGGTTTTTCTCTGGACACTCGACATGTGTCTTGTAAAAGAAAAGCTGTTGAAGTAAATACTGGACAATCTTCAGATGGTGGCAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGGTTGGAACACCATTCTTACTCAGGGTAATGCTGGGAGCAGTTCAAGCAGGTCTATTTCGTCAGAGCAGTTAAATGCAAGGCTTGGCCTGGCTATGGGGGATGAAGCCTCTGAAAGTGTTCCTGATTCAGACATTGGAGGAAGCTCAGAAGGCTTCCACAGGAATTTACGTTTGAGGATAAATCCTTCAAACCAACAAAATTCCAATCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATCCTGGTGTTCCTTCTTCCTCTCAAGTGTCACAAAGGTTTCATCCTGTTGATAATTCTCTGTACTTGAGGTCAGCTCCGGTGATAGATAATATAATTCCTCAAAGTCAGCCACTTGTAGTCCATGTGCCTGCTTTGCCAAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACATGCATTCGTCAAACTCAATTATATGTGCAGACAGAGATAATCTACCACAGGAGGATGCAAACTCAAGAAGTGTGTCTAGAAATATTTTAGAACACCCAGTATTTGTACCTCCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAATTAGAGCTTCAAGTTCAAGTAGTGCAAATTTAAGCATTCCAGGAAATGTTGCTTCTTCATCAAGGACTGGATCAAATTCAGCTACCGATCCCTCATCTGCCTCAACCTGGGTCTCTCGTCCTAATCCTCCACAGCATCCCCGGAGGTTATCTGAATATGTCCGTCGCTCCTTGTTTTCTCCTGGTTCTGATGCTACTGCAGGTCCAAGCAACAACTATTCTTCCTTGCGCTCTGGTCCTTCTACATCTGAATTGAGGGCGTTATCAACAGGGGCTCACTCAAGATCATCTTCATGGTTGGAGAGGCAAGGAGACAATGACTTTGGAATTCCCTATTCATTACGTACTTTAGCTGTTGCAAGTGAAGGCAATGGTAGACTTTTATCTGAGCTCCGCAGTGTATTGGGCCTTATGCGTAGGGGTGGGAACCTTCGATTTGAGGATGTTATGATACTTGATCAATCAGTGATTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCGTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTCAGTACTGGATTGAGTGAGGAAACAATATTGAAACTTTTGAAACTGAAGAAGTACTCAATTGAAACAGGATATCAGCTTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTACAGTGATGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATTAAACAGTGGTTAATGCATAAGAATCTGTGTCCCATTTGTAAAACAACGGGCTTGTCAACATGA 2127 0.4264 MQGQRGTIGSMSEALEFDCGSTSSNATADQQICWNHVRNPAENQIPDYILSPSDINPSYMNSINHEWQNLSGWSLGGPSSSNAPNELDNNGQKRELGWSSSISAGALAGPRLEDRRLEPSNALSLNNVNTGPVYMRNSNSHLMSQNLNLNAGLADSGCDDSQHLEHPNLHKSSESVNECSPPNIGSGSFPLPSGNNGFLVEDTDGRPGFSLDTRHVSCKRKAVEVNTGQSSDGGSSSYSQHTDGSGWNTILTQGNAGSSSSRSISSEQLNARLGLAMGDEASESVPDSDIGGSSEGFHRNLRLRINPSNQQNSNPPTAFSTGSMIRHPGVPSSSQVSQRFHPVDNSLYLRSAPVIDNIIPQSQPLVVHVPALPRNRQSFRWSGGSSSRNMHSSNSIICADRDNLPQEDANSRSVSRNILEHPVFVPPTDLRNLVQNPTIRASSSSSANLSIPGNVASSSRTGSNSATDPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSDATAGPSNNYSSLRSGPSTSELRALSTGAHSRSSSWLERQGDNDFGIPYSLRTLAVASEGNGRLLSELRSVLGLMRRGGNLRFEDVMILDQSVISGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKLKKYSIETGYQLDAEPCCVCQEDYSDGDDIGTLDCGHDFHSSCIKQWLMHKNLCPICKTTGLST. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01470 708 MobiDBLite consensus disorder prediction 440 538 - -
Seca4g01470 708 FunFam E3 ubiquitin-protein ligase MBR2 629 706 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 75 95 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 161 265 - -
Seca4g01470 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Seca4g01470 708 MobiDBLite consensus disorder prediction 223 265 - -
Seca4g01470 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Seca4g01470 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 146 707 IPR045191 GO:0061630
Seca4g01470 708 SMART ring_2 661 701 IPR001841 -
Seca4g01470 708 MobiDBLite consensus disorder prediction 501 538 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 440 480 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 304 337 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 380 400 - -
Seca4g01470 708 Pfam Ring finger domain 661 702 IPR001841 -
Seca4g01470 708 MobiDBLite consensus disorder prediction 173 193 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 380 415 - -
Seca4g01470 708 SUPERFAMILY RING/U-box 647 704 - -
Seca4g01470 708 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01470 Seca-Chr4 23835944 23842640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01470 1 708 C3H Transcription Factor Family AT2G15530 32.267 4.49e-78 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01470 4 23835944 23842640 Seca4g01470 4 23835944 23842640 ECH
Seca4g01470 4 23835944 23842640 Seca4g01470 4 23835944 23842640 PCT