Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01452 ATGGCGCAAATGCACGAGAATCCCACCGGTGACGCGGCGGCTCCGGGTGCGAACCAGTTTGTGACGACCTCATTGTACGTTGGGGATCTTGACCATGACGTCAACGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGCCAAGTTGTTTCTGTTCGTGTCTGCAGGGACTTGGCCACTCAACAATCTCTCGGTTACGGCTATGTCAATTTCAGTAACCCTCAAGACGGATTAATCGCGTTTGTTCTAATCTTGATTACAAAATGTAACTGTCACACAGCCGCCAAGGCGTTGGACGTGCTGAATTTCACTCCACTGAACAACAAACCGATTAGGATAATGTATTCTCATCGGGACCCTAGTGTTCGGAATAGTGGTGCTGCTAATATTTTTGTCAAGAATTTGGATAAGGCGATCGATAACAAGACTCTATATGATACATTTTCGGTTTTTGGAAATATTCTATCTTGCAAGATAGCGACGGATACTTCTGGCCAGTCTAAAGGCTATGGCTTTGTGCAATTTGAGAATGAAGAATCGGCACAAAATTCAATCGACAAGTTAAATGGCACAGTGATCAATGATAAACAGGTCTATGTAGGTCACTTCGTAAAAAAGCAGGATAGAGAGAATCCTCTCAGCGGTGCAAAGTTTAATAATGTCTATGTAAAAAATCTATCGGAGGCGATGACTGATGATGAGTTGAAGAAAATTTTCGGAGAATATGGAACTATTACTAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGCTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAGAGAAAATTGATAATAAGGAGTGGTATGTCGGAAAAGCCAAGAAAAAATCTGAAAGGGAGCTTGAACTGAAAGAACGACATGTGCAGAGTGTGAAGGAAACTGTTAACAAATTTCAAGGTGCAAACTTGTATCTCAAGAACTTGGATGATAGCATTAGTGATGAAAAACTCATGGAACTGTTCTCTGAGTTTGGTACAGTAACTTCATACAAGATTATGCGAGATCAACATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGAAAACCTCTCTATGTTGCCCTTGCACAAAAAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCAGTTGCAATGTCCCCTTCTTATGCACCTCCCATGCCACTGTATCCTCCGGGGGCTCCAGGGATGGGACAATTTTTGTACGGGCAAGCACCTCCAGCCATGATACCTCATCAGCCTGGATTTGGTTACCAGCCGCATTATATTCCCAGCATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTTCATTCCACTGGTTCAGCAGGGTCAACAAGTCCAGCGTCCAGGTGGACGCTGGGGAGCTGGTCCTATGCAACAACTCCCGCAGCCAGTGCCATTGATTCGGCCACAGATGTTTCCAAGGGGGCATGTCTATCGATATCCTACTGGTCCAATGCCAGGAGTAGCTGGAGGAATGATCGCATTCTCTTATAGCATGGCTGGTCAGACCATGCAAGCCCTGGCTACTTCCCTTGCAAATGCTCCTCCTGAACAGCACAGGAATATGCTTGGTGAAGTTTTATACCCGCTAGTGGATAAGCTGGAGCATGATGCAGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGTCTGAGGTGTTACTTCTGATTGAGTCACCAGATGCTCTCAAGGAAAAAGTTGCTGAGGCCATGGATGTGTTGAGAAATGCTACACCGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCTCTCTCTCTGAATGACAATCTTGGCTGA 1929 0.45 MAQMHENPTGDAAAPGANQFVTTSLYVGDLDHDVNDPQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFSNPQDGLIAFVLILITKCNCHTAAKALDVLNFTPLNNKPIRIMYSHRDPSVRNSGAANIFVKNLDKAIDNKTLYDTFSVFGNILSCKIATDTSGQSKGYGFVQFENEESAQNSIDKLNGTVINDKQVYVGHFVKKQDRENPLSGAKFNNVYVKNLSEAMTDDELKKIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGEKIDNKEWYVGKAKKKSERELELKERHVQSVKETVNKFQGANLYLKNLDDSISDEKLMELFSEFGTVTSYKIMRDQHGISRGSGFVSFSTPEEATRALGEMNGKMVAGKPLYVALAQKKEERRARLQAQFSQMRPVAMSPSYAPPMPLYPPGAPGMGQFLYGQAPPAMIPHQPGFGYQPHYIPSMRPGGAPMPNFFIPLVQQGQQVQRPGGRWGAGPMQQLPQPVPLIRPQMFPRGHVYRYPTGPMPGVAGGMIAFSYSMAGQTMQALATSLANAPPEQHRNMLGEVLYPLVDKLEHDAAAKVTGMLLEMDQSEVLLLIESPDALKEKVAEAMDVLRNATPQQSNSPADQLASLSLNDNLG. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01452 642 PANTHER RNA BINDING PROTEIN 22 76 - -
Seca4g01452 642 MobiDBLite consensus disorder prediction 619 642 - -
Seca4g01452 642 FunFam Polyadenylate-binding protein 305 410 - -
Seca4g01452 642 Pfam Poly-adenylate binding protein, unique domain 553 617 IPR002004 GO:0003723
Seca4g01452 642 FunFam Polyadenylate-binding protein 122 209 - -
Seca4g01452 642 Coils Coil 295 315 - -
Seca4g01452 642 SUPERFAMILY RNA-binding domain, RBD 23 209 IPR035979 GO:0003676
Seca4g01452 642 SMART poly_2 557 620 IPR002004 GO:0003723
Seca4g01452 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Seca4g01452 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Seca4g01452 642 FunFam Polyadenylate-binding protein 210 304 - -
Seca4g01452 642 SUPERFAMILY PABC (PABP) domain 498 634 IPR036053 GO:0003723
Seca4g01452 642 SUPERFAMILY RNA-binding domain, RBD 219 403 IPR035979 GO:0003676
Seca4g01452 642 CDD RRM4_I_PABPs 321 399 - -
Seca4g01452 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Seca4g01452 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Seca4g01452 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Seca4g01452 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 76 IPR000504 GO:0003723
Seca4g01452 642 SMART rrm2_1 323 395 IPR003954 GO:0003676
Seca4g01452 642 SMART rrm2_1 129 201 IPR003954 GO:0003676
Seca4g01452 642 SMART rrm2_1 220 292 IPR003954 GO:0003676
Seca4g01452 642 FunFam Polyadenylate-binding protein 541 623 - -
Seca4g01452 642 CDD RRM2_I_PABPs 126 202 IPR045305 -
Seca4g01452 642 Gene3D - 19 121 IPR012677 -
Seca4g01452 642 Gene3D - 122 208 IPR012677 -
Seca4g01452 642 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 622 IPR002004 GO:0003723
Seca4g01452 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 118 IPR000504 GO:0003723
Seca4g01452 642 Gene3D - 542 622 - -
Seca4g01452 642 SMART rrm1_1 24 114 IPR000504 GO:0003723
Seca4g01452 642 SMART rrm1_1 220 292 IPR000504 GO:0003723
Seca4g01452 642 SMART rrm1_1 129 201 IPR000504 GO:0003723
Seca4g01452 642 SMART rrm1_1 323 395 IPR000504 GO:0003723
Seca4g01452 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Seca4g01452 642 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 618 IPR006515 GO:0003723
Seca4g01452 642 Gene3D - 303 412 IPR012677 -
Seca4g01452 642 Gene3D - 209 302 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01452 Seca-Chr4 23518667 23523128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01452 17 638 Eukaryotic Initiation Factors Gene Family AT4G34110 62.300 0.0 766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01452 4 23518667 23523128 Seca4g01452 4 23518667 23523128 ECH