Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01451 ATGGGAAACATGAAGGTGCATCAATTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGATGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTCCTAACACAGACACTACCACTACCAATATTCCTTTCGATCTAAAGAGCTTCATCAGACCAGAAAGTGGCCCCAGAAAACTCATTTCCTCTGATGATACTAAGAAAGATCCACCTAATTCACCCAACGGCCAGCAGGTTGAAACGCATCCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAAGCATATTGGAGATGTTGTACAGAGGAGGGATGCGAACTCCAAATGCTCAACAGATAGAGCAGATCACAGCACAGCTTGGCAAGTACGGCAAGATCGAAGGGAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGCCTTTCTCATAGTCCACGGACTCACACCATTCATACTATAACTTTAGAGACCACAAACACAACGGGGGAAGTAGTAGAAAGAGATGAGGAAGATAGTCCGTACAAGAAGTGTAGGAAATGGGTATTTGAGTGCTTGGAAGATCAACAAAGCAGGTTAACAGGAGGTAATAAAGAGGAGGAGGAACATAGAACTCTGGAGCTATTCCCATTGCACCCGGAAGGGAGATTATGA 693 0.4661 MGNMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLPNTDTTTTNIPFDLKSFIRPESGPRKLISSDDTKKDPPNSPNGQQVETHPGGTRWNPTQEQISILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTHTIHTITLETTNTTGEVVERDEEDSPYKKCRKWVFECLEDQQSRLTGGNKEEEEHRTLELFPLHPEGRL. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01451 230 MobiDBLite consensus disorder prediction 49 91 - -
Seca4g01451 230 Gene3D - 86 153 - -
Seca4g01451 230 SMART HOX_1 84 151 IPR001356 GO:0003677
Seca4g01451 230 MobiDBLite consensus disorder prediction 68 91 - -
Seca4g01451 230 CDD homeodomain 87 148 IPR001356 GO:0003677
Seca4g01451 230 Pfam Homeodomain 87 146 IPR001356 GO:0003677
Seca4g01451 230 ProSiteProfiles 'Homeobox' domain profile. 82 147 IPR001356 GO:0003677
Seca4g01451 230 SUPERFAMILY Homeodomain-like 83 153 IPR009057 -
Seca4g01451 230 FunFam WUSCHEL-related homeobox 4 86 153 - -
Seca4g01451 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 229 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Seca4g01451 230 MobiDBLite consensus disorder prediction 206 230 - -
Seca4g01451 230 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01451 Seca-Chr4 23479127 23481417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01451 4 153 Wox Gene Family AT1G46480 65.244 5.07e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca4g01451 Homeodomain 3.2e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01451 4 23479127 23481417 Seca4g01451 4 23479127 23481417 ECH