Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01431 ATGATATCATATCATAGATCTATATTCAAGATGGATGCCCTCTACTGCTCTGAAGAACATTGGGAGGAACAAGTAGGCGAAGATGAATTAGAGTTATGTAGTGATTCCTTAAGCGCTAATACTACGAGTACCATAATAAATTCCCCTCCTTGGTTTCTAGAAACGGACATGTTCTGCGACGATGAAGAGCTAACGTCACTGTTAGCTAAAGAACAACACAACCCACTTTTCTCCTGTCTCCAAAACAACCCTGTTTTGGAGAGTGCTCGTAGAGAAGCAGTGGAGTGGATGATGAAAGTGAATGCACACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTTGATTACTTAGACAGGTTCCTTTTCAGCTTCCGTTTTCAGAATGGGAAGCCATGGATGACTCACCTTGCTGCTGTTGCTTGTCTCTCCCTTGCTGCCAAAGTGGAGGAGACTCAAGTTCCCCTTTTACTAGACCTCCAAGTGGAGGACAGTAGATACTTGTTTGAAGCTAAGACTATTAAAAGGATGGAGATTTTGGTACTTTCAACCCTTGGATGGAAGATGAATCCAGCAACATCTCTCTCTTTTGTTGATTATATCATAAGAAGACTTGGATTGAAGGATCATCTCTGCTGGGAGTACCTCAGGAGATGTGAGGGTGTTCTTCTCTCTGTCATTGGAGCAGATTCTAGATTTATGAGTTATCTACCTTCTGTGTTGGCAACTGCTACAATGATGCACGTTGTCAATAGCGTGGAGCCTCATCTAGGAGTCGAATACCAAAGCCAGCTACTTGGTATTCTTGGAATCGACAAGGACAAGGTGGATGAATGTTGCAAGGGTATGTTGGAAGTGTGGGCGGGGTATGAGCAGGGGAAGCAATGCATCAAACGCAAGTTTGGGTCCATTCCTGGTAGCCCAAATGGCGTAATGGATGTGTCTTTTAGCTGTGATAGCTCCAATGACTCTTGGGCTGTAGCTGCTGCTTCTGTGTCATCCTCACCAGAGCCTTTGTCCAAGAAAACTAGGACTCAAGAACAGCTTCAACTAAACCCTTCCAACTCAGATTTTCTCAACATTCCTCGCCTTTAA 1095 0.442 MISYHRSIFKMDALYCSEEHWEEQVGEDELELCSDSLSANTTSTIINSPPWFLETDMFCDDEELTSLLAKEQHNPLFSCLQNNPVLESARREAVEWMMKVNAHYSFSALTAVLAVDYLDRFLFSFRFQNGKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKRMEILVLSTLGWKMNPATSLSFVDYIIRRLGLKDHLCWEYLRRCEGVLLSVIGADSRFMSYLPSVLATATMMHVVNSVEPHLGVEYQSQLLGILGIDKDKVDECCKGMLEVWAGYEQGKQCIKRKFGSIPGSPNGVMDVSFSCDSSNDSWAVAAASVSSSPEPLSKKTRTQEQLQLNPSNSDFLNIPRL. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01431 364 Gene3D - 191 281 - -
Seca4g01431 364 Pfam Cyclin, C-terminal domain 193 317 IPR004367 -
Seca4g01431 364 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Seca4g01431 364 SMART cyclin_7 95 183 IPR013763 -
Seca4g01431 364 Pfam Cyclin, N-terminal domain 73 190 IPR006671 -
Seca4g01431 364 SUPERFAMILY Cyclin-like 176 296 IPR036915 -
Seca4g01431 364 SUPERFAMILY Cyclin-like 59 190 IPR036915 -
Seca4g01431 364 FunFam D3-type cyclin 83 190 - -
Seca4g01431 364 CDD CYCLIN_AtCycD-like_rpt2 193 283 - -
Seca4g01431 364 PANTHER CYCLINS 66 285 IPR039361 -
Seca4g01431 364 FunFam CYCLIN D32 191 281 - -
Seca4g01431 364 Gene3D - 74 190 - -
Seca4g01431 364 SMART Cyclin_C_2 192 320 IPR004367 -
Seca4g01431 364 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01431 Seca-Chr4 23082903 23084940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01431 9 286 Core Cell Cycle Gene Families AT4G34160 52.158 8.39e-94 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01431 4 23082903 23084940 Seca12g02374 12 33797319 33799501 ECH
Seca4g01431 4 23082903 23084940 Seca8g07764 8 174896434 174899264 ECH
Seca4g01431 4 23082903 23084940 Seca4g01431 4 23082903 23084940 ECH
Seca4g01431 4 23082903 23084940 Seca4g01431 4 23082903 23084940 PCT