Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01426 ATGGGGGGTTGGGCTATCGCTGTGCATGGTGGTGCTGGTGTTGACCCTAATCTCCCACCCCAGCGCCAGGAACAAGCCAAGCAACTCCTTACTCACTGTCTTAATCTTGGCATCTCTGCTCTTCGTTCCAATGCTTCTGCTGTCGATGTTGTTGAACTTGTCGTGAGGGAACTTGAAACGGATCCCCTGTTCAACTCTGGTCGTGGATCTGCCCTGACCGAGAAGGGAACAGTGGAAATGGAAGCTAGCATCATGGACGGTCCCAAAAGAAGATGCGGCGCCGTATCTGGCATTACCACAGTGAAAAACCCCATCTCACTCGCTCGCCTTGTCATGGACAAGTCCCCTCATTCTTACCTCGCCTTTTCCGGCGCTGAAGATTTCGCCAAGCAACAGGGCGTGGAGGTCGTCGACAACGAATACTTCATCACTCCTGATAATGTTGGCATGCTGAAACTCGCAAAGGAAGCAAACACCATCCTGCAGTTTGATTATAGGATTCCAACAACGGGTGGTTTCGACACGTGCGGTGCAGGAGTGGAGAGTCCATTGCAAATGAATGGACTGCCAATCAGCGTGTACGCGCCCGAGACGGTAGGATGTGTAGTGGTGGACAGTGAGGGAAGGTGTGCTGCTGCCACGTCAACAGGTGGTTTGATGAACAAAATTAGCGGTAGGATTGGTGACTCACCTCTCATAGGTGCAGGGACATACGCGTGTGAGCTTTGTGGGGTCTCTTGCACCGGTGAAGGAGAGGCTATAATACGTGGAACCTTGGCGCGTGAAGTGGCGGCGGTCATGGAATACAAAGGCCTTGGTCTTCAACAGGCTGTGGACTTTGTTATTAAGCACCGCCTCGATGAAGGGTTTGCTGGGCTTATTGCAGTGTCCAATAAGGGTGAAGTTGCTTATGGGTTTAACTGTAATGGCATGTTCAGAGGTTGTGCTACTAAGAATGGCTTCATGGAGGTGGGAATCTGGGAATAA 987 0.5147 MGGWAIAVHGGAGVDPNLPPQRQEQAKQLLTHCLNLGISALRSNASAVDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGITTVKNPISLARLVMDKSPHSYLAFSGAEDFAKQQGVEVVDNEYFITPDNVGMLKLAKEANTILQFDYRIPTTGGFDTCGAGVESPLQMNGLPISVYAPETVGCVVVDSEGRCAAATSTGGLMNKISGRIGDSPLIGAGTYACELCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQQAVDFVIKHRLDEGFAGLIAVSNKGEVAYGFNCNGMFRGCATKNGFMEVGIWE. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01426 328 CDD Asparaginase_2 5 320 - -
Seca4g01426 328 Pfam Asparaginase 4 327 IPR000246 GO:0016787
Seca4g01426 328 PANTHER L-ASPARAGINASE 4 316 IPR000246 GO:0016787
Seca4g01426 328 FunFam Isoaspartyl peptidase/L-asparaginase 198 328 - -
Seca4g01426 328 Gene3D (Glycosyl)asparaginase 198 328 - -
Seca4g01426 328 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 325 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01426 Seca-Chr4 23017155 23019248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01426 6 288 Miscellaneous Gene Families AT4G00590 27.152 2.02e-19 86.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01426 4 23017155 23019248 Seca4g01426 4 23017155 23019248 ECH
Seca4g01426 4 23017155 23019248 Seca4g01426 4 23017155 23019248 PCT