Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01409 ATGGAGACCCGTGCAGCAAAGAAGAGGGCAAACACTGCCGCACCAGTCCTACTGGGCAATAGGCAGGTCAAGAGGCAACGTGTTGTGTTGGGGGAACTTCCCAATCTTCCCAATCTCATCCTTCCCCAATCTCCCCAAAAGCAGAAACTTCGATGTCGGAAGAATCCCCAGGTCAAGAAACCAGCTCCTGCTGGTGCCACCATGGATTTGAAGTCAGAGAAAACAGTTGACCATGATTCCCAGATTGGCGAACCTTATGCTTTGGACATCTTCACCTATCTTCGCATAATGGAGATGGAGAAAAAGAGAAGACCAATGGTTGATTACATGGAGAGGGTTCAGAGAGATATTGTTACTACTAGCATGAGAGGGATATTGGTGGATTGGTTAGTAGAGGTTGCAGAGGAGTACAAGCTTCTCTCTGATACCCTTCATCTCTCTGTTTCATACATTGACAGGTTCCTATCTGTGAATCTTGTCCCTAAGTCCAGGCTTCAATTGTTAGGTGTTTCCTCCATGCTCATTGCATCGAAATATGAAGAAATTAACCCACCCAATGTGGAACAGTTGTGCAACATTACTGATAACACATACAACAAGTCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGGCCCTAAAGTTTGAAATGGGCAACCCTACTGTAATCACCTTTCTAAGAAAATTTGCTGTGATTGCATCTGAGAATAAAAAAACTCCAAATCTGCAGAATGAATTTCTAAGCAACTATCTTGCTGATCTAAGTTTGTTGGACTATGATTGTATAAGATTCTTGCCTTCTACTGTTGCTGCATCGGTTATATTTCTTGCCAGATTTATTATTAGTCCTGAAGTGCATCCTTGGACTTCATCCTTGTATGAATGCTCGGGTTATAAATCTGCTGACTTGAAAGAATGTGTTCTCATCTTACATGACTTGTATTTGTCAAGAAGATCAGCATCCTTCCAAGCTGTTAGGGAGAAATACAAGCAGCACAAGGTGATTTTTTCACCTTTCTTTTGCTGA 1029 0.4218 METRAAKKRANTAAPVLLGNRQVKRQRVVLGELPNLPNLILPQSPQKQKLRCRKNPQVKKPAPAGATMDLKSEKTVDHDSQIGEPYALDIFTYLRIMEMEKKRRPMVDYMERVQRDIVTTSMRGILVDWLVEVAEEYKLLSDTLHLSVSYIDRFLSVNLVPKSRLQLLGVSSMLIASKYEEINPPNVEQLCNITDNTYNKSEVVKMEADILKALKFEMGNPTVITFLRKFAVIASENKKTPNLQNEFLSNYLADLSLLDYDCIRFLPSTVAASVIFLARFIISPEVHPWTSSLYECSGYKSADLKECVLILHDLYLSRRSASFQAVREKYKQHKVIFSPFFC. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01409 342 ProSitePatterns Cyclins signature. 123 154 IPR006671 -
Seca4g01409 342 MobiDBLite consensus disorder prediction 45 76 - -
Seca4g01409 342 SMART cyclin_7 128 212 IPR013763 -
Seca4g01409 342 SMART cyclin_7 225 313 IPR013763 -
Seca4g01409 342 PANTHER CYCLINS 72 332 IPR039361 -
Seca4g01409 342 Pfam Cyclin, C-terminal domain 221 335 IPR004367 -
Seca4g01409 342 Pfam Cyclin, N-terminal domain 89 218 IPR006671 -
Seca4g01409 342 FunFam Cyclin superfamily protein, putative 218 290 - -
Seca4g01409 342 SUPERFAMILY Cyclin-like 80 218 IPR036915 -
Seca4g01409 342 Gene3D - 89 335 - -
Seca4g01409 342 CDD CYCLIN_AtCycA-like_rpt2 221 334 - -
Seca4g01409 342 Gene3D - 103 219 - -
Seca4g01409 342 SUPERFAMILY Cyclin-like 221 335 IPR036915 -
Seca4g01409 342 SMART Cyclin_C_2 221 339 IPR004367 -
Seca4g01409 342 FunFam G2/mitotic-specific cyclin 105 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01409 Seca-Chr4 22693780 22696634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01409 3 334 Core Cell Cycle Gene Families AT5G43080 57.357 5.28e-127 366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02360 4 40161673 40163354 Seca4g01409 4 22693780 22696634 PCT