Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01379 ATGGCTCTGGAAGCTATGAAATCACCCACCACCGCCACCCCATCCTTCAGTCCCTTCGAGGAACCCAATCTCAGCTACCTAGAAACACCATGGGCGAAGCGAAAACGTTCAAAGCGTCCCCGCACTGAGGAAGAGTATCTTGCTCTCTGCCTCATCATGCTCGCTCGCGGCCGCAGCGGTGGTGAAACCGTCTCTACCGTCAAGCCTGCTTTATCTGATAATGAGTCGGCGCCGCTAACTACCACCGCCAAGCTCAGTTACAAATGCTCTGTATGCAACAAAGCCTTCTCTTCTTACCAAGCACTAGGCGGACACAAGGCCAGTCACCGGAAATTCGCCGGCGCTGTTGCTGCTGCTGAGGATCAGTCTACTTCCTCTGCCGTGACAACCAGTTCCGCATCCAACGGTGGAGGCAAGGTCCATCAGTGTTCAATCTGCCATAAGTCGTTCCCAACAGGGCAAGCCTTGGGAGGACACAAACGTTGCCACTATGAAGGCGGTGGTGGCGGTAGCAGCGCCGTAACTGCCTCAGAAGGAGTCGGGTCCACTCACAGTCACCACCGCGACTTCGATCTCAACCTCCCGGCTTTTCCGGACTTCTCAACTAAGTTCTTCGTTGACGACGAGGTCTCCAGCCCTCTTCCTAAGAGGCCCTGTCTTTCGGCCATACCCAAGATTGAAATCCCTCAACACTAA 696 0.5489 MALEAMKSPTTATPSFSPFEEPNLSYLETPWAKRKRSKRPRTEEEYLALCLIMLARGRSGGETVSTVKPALSDNESAPLTTTAKLSYKCSVCNKAFSSYQALGGHKASHRKFAGAVAAAEDQSTSSAVTTSSASNGGGKVHQCSICHKSFPTGQALGGHKRCHYEGGGGGSSAVTASEGVGSTHSHHRDFDLNLPAFPDFSTKFFVDDEVSSPLPKRPCLSAIPKIEIPQH. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01379 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Seca4g01379 231 Pfam C2H2-type zinc finger 140 164 - -
Seca4g01379 231 Pfam C2H2-type zinc finger 87 111 - -
Seca4g01379 231 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Seca4g01379 231 Gene3D Classic Zinc Finger 84 163 - -
Seca4g01379 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Seca4g01379 231 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g01379 231 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Seca4g01379 231 MobiDBLite consensus disorder prediction 8 22 - -
Seca4g01379 231 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 196 IPR044653 GO:0003700
Seca4g01379 231 SUPERFAMILY beta-beta-alpha zinc fingers 87 163 IPR036236 -
Seca4g01379 231 SMART c2h2final6 141 163 IPR013087 -
Seca4g01379 231 SMART c2h2final6 87 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01379 Seca-Chr4 22216674 22217369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01379 1 228 C2H2 Transcription Factor Family AT1G27730 49.794 5.76e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g01379 zf-C2H2_6 6.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01379 4 22216674 22217369 Seca4g01379 4 22216674 22217369 ECH
Seca4g01379 4 22216674 22217369 Seca4g01379 4 22216674 22217369 PCT