Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01372 ATGGAAACCCTTGGAGCCTTCCCTGATGGAGAATGGGAATGCTTTAGCAGAATGTTTGCAATTGAAGAGCATGATGACTCACAACAACTACTTCATCAAAGCTCTCTTCTGCTTGGTGAAGATGATGGCAACATTGCAATACAATCCATGTTTTGCTCCATCCCTGAAGCTGGAGGAGATAAGAGTATGTTTTACTCTATTGATTCTCACTACTCTAATTTGCAGTATATATCTCAAGAAAGTAGTCACATTAGCAATTGTAGTGGCCATACAGTCTTCTTTCCCAATCCAGGTCACACAAACTACTATTTCAATTATCCTGATCTTGTCCTAGCAAATGATCCCTGCACATCCATTGGTTTTTGCATGATGGATAAGAAAAAGCCAGAGTCTTTTGTAATGGAAGAGAATGTTAACTTGAATGAAAATGAGAAAAGTGACAGATTATCAGAAATTTCTGATCACAGTCAAGTAGAACCTATTGTTTTCCCCGCCAATAAGTTAAAGCTCAAAAGGATGCTTCATGTGCCAGAATTGGAAGTGCATGTAGTAGAAGATAAAATAAACTCATGTGGGAATAGTAAGAAAAAGCCTCGTGCTTCAAAAGATGTGCAAAGATGCATTAAGAATGCACAGTCCAAAAAGAACCAGAAGGGTGACAGAGTTGGGAACGAGGCAGAAGAAACCAATGCAGGTTCAGATGGACATAGCTCTAGTAGTTATATCTCAGAGGAGCATAATACTTCTCAGGAAAATAATGGAGGTGCTACTTCAGCATTTAAATCACCTGTGGCTCTCAACTTAAATGGGAAAAAAAGAGTCAGCAGGGGATCAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCCAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTTAAATTTTTGCAGCTTCAGATCAAGCTTCTAAGCTCTGATGATTTGTGGATGTATGCTCCGATTGCTTATAATGGACTTGACATTGGACTCAACCGCAGCGGGAAGATTTCTCCACCTTGA 1092 0.3974 METLGAFPDGEWECFSRMFAIEEHDDSQQLLHQSSLLLGEDDGNIAIQSMFCSIPEAGGDKSMFYSIDSHYSNLQYISQESSHISNCSGHTVFFPNPGHTNYYFNYPDLVLANDPCTSIGFCMMDKKKPESFVMEENVNLNENEKSDRLSEISDHSQVEPIVFPANKLKLKRMLHVPELEVHVVEDKINSCGNSKKKPRASKDVQRCIKNAQSKKNQKGDRVGNEAEETNAGSDGHSSSSYISEEHNTSQENNGGATSAFKSPVALNLNGKKRVSRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGLNRSGKISPP. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01372 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 350 - -
Seca4g01372 363 Gene3D - 280 336 IPR036638 GO:0046983
Seca4g01372 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 343 IPR036638 GO:0046983
Seca4g01372 363 MobiDBLite consensus disorder prediction 230 260 - -
Seca4g01372 363 CDD bHLH_AtIND_like 279 341 - -
Seca4g01372 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Seca4g01372 363 MobiDBLite consensus disorder prediction 210 260 - -
Seca4g01372 363 SMART finulus 284 333 IPR011598 GO:0046983
Seca4g01372 363 FunFam Basic helix-loop-helix transcription factor 279 336 - -
Seca4g01372 363 MobiDBLite consensus disorder prediction 213 227 - -
Seca4g01372 363 Pfam Helix-loop-helix DNA-binding domain 288 328 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01372 Seca-Chr4 22139268 22140990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01372 61 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.271 1.08e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01372 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01372 4 22139268 22140990 Seca4g01372 4 22139268 22140990 ECH