Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01369 ATGGGAACAGATATTCCGACGAATTACAGTTACATGACAGCAGGGATTACAAACGACGATTCCTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCCCTACGGCTTCTTCCCAAACCCGACGCCTTCTCCTTTCTTGCGCTTCTGACAATTCCGACGATCTCATCCGTCAATTAGTCCTCGATCTCAACTCTTGTTCCATTGATGAACAAAAACAAGCCACCATGGAGATCAGATTACTCGCCAAGAACAAGCCAGAAAATCGCCTCAAAATCGCCAAAGCCGGCGCTATCACTCCCTTGATTTCCCTCTTATCCTCGCCGGACCTTCAGCTTCAAGAATACGGTGTAACGGCGATTTTGAATCTCTCCCTCTGCGACGAGAACAAAGACCTAATTGCTTCGTATGGAGCAATTAGGCCTCTGGTTCGAGCACTGAAAACAGGGACTCCAACTGCCAAGGAGAATGCATCGTGTGCTTTGCTTCGTCTCTCGCATACGGAAGAGAACAAGGTTGCAATTGGAAGGGCGGGAGCGATTCCTCTAGTGGTGAACCTTCTAGAAAGCGGCGGTTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTATTCGCTGTGTTCGGTGAAGGAGAACAAGATGAGGGCGGTGAATGCGGGGATAATGAAGCCGTTGGTGGAATTGATGGCGGATTTAGGGTCGAACATGGTGGATAAGTCGGCGTATGTTTTGAGTGTGCTGGTGACGGTGGGAGAGGGGAGGAGGGCGTTGGTGGAGGAAGGAGGGATTCCTGTGTTGGTGGAGATTGTGGAGGTTGGGACGCAGAGACAGAAGGAAATTGCGGTGGTTATTTTGTTGCAGATTTGTGAGGAGAATGTGGCTTACCGTACTATGGTGTCTCGAGAAGGAGCCATTCCTCCCTTGGTTGCTTTGTCGCAGACCGGCACCAATCGCGCCAAGCAAAAGGTGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCGGCAACGGTGCTGGCCGTAGCTCAGAAGTGTCAGCATAA 1053 0.5138 MGTDIPTNYSYMTAGITNDDSSSAFSDCNSDRSGEFPTASSQTRRLLLSCASDNSDDLIRQLVLDLNSCSIDEQKQATMEIRLLAKNKPENRLKIAKAGAITPLISLLSSPDLQLQEYGVTAILNLSLCDENKDLIASYGAIRPLVRALKTGTPTAKENASCALLRLSHTEENKVAIGRAGAIPLVVNLLESGGFRGKKDASTALYSLCSVKENKMRAVNAGIMKPLVELMADLGSNMVDKSAYVLSVLVTVGEGRRALVEEGGIPVLVEIVEVGTQRQKEIAVVILLQICEENVAYRTMVSREGAIPPLVALSQTGTNRAKQKVAETLIELLRQPRSGNGAGRSSEVSA. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01369 350 SUPERFAMILY ARM repeat 56 333 IPR016024 -
Seca4g01369 350 Gene3D - 213 342 IPR011989 -
Seca4g01369 350 SMART arm_5 170 210 IPR000225 GO:0005515
Seca4g01369 350 SMART arm_5 294 334 IPR000225 GO:0005515
Seca4g01369 350 SMART arm_5 211 251 IPR000225 GO:0005515
Seca4g01369 350 SMART arm_5 252 292 IPR000225 GO:0005515
Seca4g01369 350 SMART arm_5 88 128 IPR000225 GO:0005515
Seca4g01369 350 SMART arm_5 129 169 IPR000225 GO:0005515
Seca4g01369 350 PANTHER U BOX DOMAIN-CONTAINING 58 334 - -
Seca4g01369 350 Gene3D - 18 194 IPR011989 -
Seca4g01369 350 FunFam RING-type E3 ubiquitin transferase 47 339 - -
Seca4g01369 350 Pfam Armadillo/beta-catenin-like repeat 89 127 IPR000225 GO:0005515
Seca4g01369 350 Pfam Armadillo/beta-catenin-like repeat 171 210 IPR000225 GO:0005515
Seca4g01369 350 Pfam Armadillo/beta-catenin-like repeat 130 168 IPR000225 GO:0005515
Seca4g01369 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 141 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01369 Seca-Chr4 22113946 22117612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01369 40 344 U-box Gene Family AT2G23140 48.852 7.22e-82 259