Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01356 ATGCTGTGCGCTTGCTCCGGTGAGCAATTCAAATTTGAAGAACCGCCACAGTCGCCGGAATCCCTCGCAACAAGGGATTTCTCTGCCAGTGGACTTTCTTCTAGGACTGCGGATTGGGAATCCAAATTTGATGAAACTCAAGTAGAAGAAGTTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAAGCTAGGGCTTTGCTGGGGAGACTTGAATACCAAAGAGGCAACTTTGAAGCTGCCCTTCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCAAGGATGATCAAGGCAATTGCTGAAAGAATTAAGCAAAGAAAACCACGTTCCAAGGCTGACATAGTCATTCTTCCAAATGTCTTGTCACTGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCATTATCCTTAGAGGAACTTGGAAGATACATTGATGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACAGAGCATTGGAGTTGCTTCCAAGCTTGTGGATCAGGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGTCGTGCTTTGGTCAAGCCATGGAATTTGGAGCAACGAAGGTTGGCTGGTGTGCAAAAATATTTAGCCACAACTCTGCTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCACTGGCAAGTGTGGGGTCACATAACACCCAAGAGTAACATTGAAGAAGCAATACTTTTGCTATTAATACTGATGAGCAAGGTGGCAACTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTTACTGGGATGTTTGAGTCGTTGGCAGATCATGTAGAGCAGATCCTTCCAGGCATCTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACAAAATGAAGCAGCATTGAACCTTTTGAGGAAGGCACGTGGTAGTTCTGAGGCCAAGCACATACCCCATTTTCAATCATTTTTGTTTGGAGCAAAACTTTGTTCTCAAGATCCTCGCTATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATTTAGCTAAGCACCAAAATGAGCATTTTTTGGGTCAAGGCCGCAAATTTCTTGGTGTTTGCTATGGAGCTGCAGCTAGACTTTCTGTATTGGATCATGAAAGAAGTATATTTCAAAAAGAGGCTTTGAATTTTCTAAACTGTGCTGCTGTAAGTGAGAATGGTAACCCAGAAGTGATGTTCAGTCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTATGACAATATAATGATGTGCCCAGACATGATAGTCGGCAGTTCAAGAAGAGGTTGGCAGCTTTTAGCACTCATTGTATCAGCACAACAACGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAGTTAGAACTTTTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATTGAGAGCTACAGAATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTATTGCTTCAAGATAAGAACTCTGATGAAGCAAAAACATTCAGGAAAGAGGTAGTAACGGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCCGATGTTGGTTCCTTATTTGATGCAAAAGCTTGTGTTGACAAAGCCCAATTGATAGATTTTTTTTCTCCAAGAAGTTGGCATATTACAGGTAAGGAACTTGCTTACTAA 1860 0.421 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTADWESKFDETQVEEVESTLKEALSLNYEEARALLGRLEYQRGNFEAALQVFQGIDIKGLTPRMIKAIAERIKQRKPRSKADIVILPNVLSLHSVSLLLEAILLKALSLEELGRYIDAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHRALELLPSLWIRAGFLDEAVTAYRRALVKPWNLEQRRLAGVQKYLATTLLYGGVEVSLPSHWQVWGHITPKSNIEEAILLLLILMSKVATREIDWDAEIMDHLTFALSVTGMFESLADHVEQILPGIYSRAERWYFLALCYSAAGQNEAALNLLRKARGSSEAKHIPHFQSFLFGAKLCSQDPRYAHEGINFSREVIDLAKHQNEHFLGQGRKFLGVCYGAAARLSVLDHERSIFQKEALNFLNCAAVSENGNPEVMFSLGLENAIQRNLDAAYDNIMMCPDMIVGSSRRGWQLLALIVSAQQRFKDAETIVDFALDEAGGMDQLELLRLKAVLQIAQQQPKQAIESYRILLALIQAKKELLLQDKNSDEAKTFRKEVVTERKLEMEAWQDLATIYADVGSLFDAKACVDKAQLIDFFSPRSWHITGKELAY. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01356 619 SUPERFAMILY TPR-like 424 603 IPR011990 GO:0005515
Seca4g01356 619 MobiDBLite consensus disorder prediction 21 37 - -
Seca4g01356 619 Gene3D Tetratricopeptide repeat domain 40 345 IPR011990 GO:0005515
Seca4g01356 619 Gene3D Tetratricopeptide repeat domain 481 618 IPR011990 GO:0005515
Seca4g01356 619 MobiDBLite consensus disorder prediction 11 38 - -
Seca4g01356 619 PANTHER PROTEIN NPG1 1 615 IPR043376 -
Seca4g01356 619 Coils Coil 56 76 - -
Seca4g01356 619 SUPERFAMILY TPR-like 65 463 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01356 Seca-Chr4 21937760 21941118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01356 1 614 Calmodulin-binding Proteins AT1G27460 57.443 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01356 4 21937760 21941118 Seca4g01356 4 21937760 21941118 ECH
Seca4g01356 4 21937760 21941118 Seca4g01356 4 21937760 21941118 PCT