Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01352 ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGAGAAAACAGTTTATCTGGTTGATAAGTTGACTGCTGATAACCGAGTGTACCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAATTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAACTGTTCAAAAGAACTGGTAGCCTTGACAAAAGTTTTGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACTGGTGATAATGAGCAGAAACCTGCAGCAACCAAAGTCTCAAGCATGTTTGTTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTCCATATCACAAGAGTTGTTTCAAATGCACTCATGGAGGCTGTGTTATTAGTCCTTCTAATTACATTGCACATGAGGGAAAACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAATGCAATTCATGATAAACTCAATGGTGAAGTAGTTGCAGCTGAAACATGA 597 0.4154 MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDNEQKPAATKVSSMFVGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNAIHDKLNGEVVAAET. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01352 198 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Seca4g01352 198 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Seca4g01352 198 FunFam LIM domain and actin-binding 1 105 175 - -
Seca4g01352 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Seca4g01352 198 FunFam LIM domain and actin-binding 1 4 74 - -
Seca4g01352 198 CDD LIM2_SF3 111 171 - -
Seca4g01352 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Seca4g01352 198 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Seca4g01352 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 176 - -
Seca4g01352 198 MobiDBLite consensus disorder prediction 77 97 - -
Seca4g01352 198 MobiDBLite consensus disorder prediction 79 93 - -
Seca4g01352 198 CDD LIM1_SF3 6 68 - -
Seca4g01352 198 PANTHER OS06G0237300 PROTEIN 4 93 - -
Seca4g01352 198 Pfam LIM domain 10 64 IPR001781 -
Seca4g01352 198 Pfam LIM domain 111 165 IPR001781 -
Seca4g01352 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Seca4g01352 198 Gene3D Cysteine Rich Protein 4 74 - -
Seca4g01352 198 Gene3D Cysteine Rich Protein 105 175 - -
Seca4g01352 198 SMART lim_4 9 61 IPR001781 -
Seca4g01352 198 SMART lim_4 110 162 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01352 Seca-Chr4 21895852 21897970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Seca4g01352 LIM 4.6e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01352 4 21895852 21897970 Seca4g01352 4 21895852 21897970 ECH
Seca4g01352 4 21895852 21897970 Seca4g01352 4 21895852 21897970 PCT