Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00582 ATGGAGCTAATAATTCGGCGCACTTCATGCACGCTGTCTAGATTTAATTGCAAGCTTCGATTTGCCGTAGTTGTTTTCGAGATTTTTTTGATTTTGACATGGGTGGAAGCCCACAATGCAAAGCCCTATGAAGGCCAACTTCAACGGGGAGGCTTAGAAAGGAATACTGACAACATTGCCTCACACTCTTGCATACATGACCAGATTATTGAACAGAGGAAGCGACCTGGTCACAAGGTGTATTCAATTACCCCTCAGGTTTACGAGCCTGATCTCTTGAAGCCCCTTCAACATAAAGGTAGGGCATTACTTGAATCATCAATATCATCAGGGACAAAAAAGGATGCAAAGGAACCTATTAGGATATATCTAAATTATGATGCTGTTGGCCACTCCCCTGACAGAGATTGTCGAAAAGTTGGTGATATTGTCAAACTTGGAGAGCCTCCTGTGACTTCTCTTCCTGGTTTCCCTTCTTGTAATCCTCATGGTAATCCCCCAATTTTTGGTGATTGTTGGTATAACTGTACTTTTGAAGATATCTCAGGAGAGGACAAAAAACGTCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTCAAGGGAAACTTGCGGTTAAGTGGATATTCTGCATGTGGACAAGATGGAGGCGTACAGCTTCCCCGTGTATATATTGAGGAGGGTGTCTCTGATGCCGATTTAGTTCTTTTGGTGACTACAAGACCTACAACTGGAAATACACTTGCATGGGCAGTGGCATGTGAACGGGATCAATGGGGCCGCGCTATAGCTGGACACGTTAATGTTGCTCCTCGCCATTTGACTGCTGAGGCAGAGACTTTGCTTTCAGCTACTTTGATACATGAGGTTATGCATGTTCTTGGTTTTGATCCACATGCCTTTGCTCATTTTAGAGATGAAAGGAAAAGACGACGTAATCAGGTTACTGAACAAGTGATGGATGAAAAGCTTGGACGGATGGTAAATCGCGTGGTGCTTCCTCGTGTTGTCATGCATTCACGATATCATTATGCGGCGTTCTCTGGAAATTTTACCGGTTTAGAGCTGGAAGATGGTGGAGGACGCGGCACATCAGGTTCTCACTGGGAAAAAAGGCTTCTGATGAATGAAATTATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTCTTAGAAGATAGCGGGTGGTACAAAGCCAATTATAGCATGGCAGACCGTCTTGATTGGGGTCGTAACCAAGGTACTGAATTTGTCACCTCCCCCTGCAATCTCTGGAAGGGAGCCTATCATTGCAACACAACACAGTTTTCTGGCTGTACATATAATAGGGAGGCAGAGGGATACTGCCCAATCCTAACATATAGTGGAGACCTCCCTCAGTGGGCACAGTATTTTCCACAAGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCGTACTCTGATGGATCATGTACTGACACTAACAGTGCACGAGCACCTGATAGAATGCTAGGTGAAGTCAGAGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTACGCACAGGCTTTGTACGAGGTTCTATGACCCAGGGAAATGGTTGTTACCAACACCGGTGTATCAACAATTCTTTAGAGGTTGCTGTGGATGGTATCTGGAAAGAGTGTCCTCATGGTGGTGGACCCATTCAGTTCCCTGGCTTTAACGGTGAATTAATCTGCCCTGCATATCATGAGCTCTGTCACACTGACCCTGTATCTGGGTCTGGTCAATGTCCAAATTCATGTAATTTCAATGGAGATTGTGTCGATGGAAGGTGCCACTGCTTTCTTGGATTTCATGGTCATGATTGCAGTAGACGTTCCTGCCCCAGCAATTGCAATGGCAATGGCATATGCCTTTCCAATGGGATTTGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTGTGCGATGAGCAATGCAGCCTTCATGGTGGGGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATACACATGCCAGAACACCTCCATGCTCCTATCTAGTCTTTCTGTTTGCAAAAATGTGCTGGGGAATGATGTTTCTGGACAGCATTGTGCACCCAGTGAGCCTAGCATACTACAGCAGCTGGAAGAAGTGGTTGTCATGCCCAACTACCACCGATTATTCCCTGGTGGCGCTAGGAAATTATTTAATATATTTGGCAGCACCTACTGTGATGAGGCTGCTAAACGGCTTGCCTGCTGGATCTCAATCCAGAAGTGTGACAAGGATGGAGACAACAGGCTTCGAGTATGCCATTCTGCATGCCAATCTTATAATGTAGCGTGTGGAGCTTCACTTGACTGCTCTGACCAAACCCTTTTCAGCAGTGAGGGGGAGGGGGAGGGTCAGTGCACTGGGTCTGGTGAGATGAAATTATCATGGTTTAATCGTCTGCGAAGTAGTTTTTCTTTGAGAAATAGTTCCTTGAAAGGAATATCTGTAAGATATAGGCAGCTTTAA 2583 0.451 MELIIRRTSCTLSRFNCKLRFAVVVFEIFLILTWVEAHNAKPYEGQLQRGGLERNTDNIASHSCIHDQIIEQRKRPGHKVYSITPQVYEPDLLKPLQHKGRALLESSISSGTKKDAKEPIRIYLNYDAVGHSPDRDCRKVGDIVKLGEPPVTSLPGFPSCNPHGNPPIFGDCWYNCTFEDISGEDKKRRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRVYIEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRNQVTEQVMDEKLGRMVNRVVLPRVVMHSRYHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPILTYSGDLPQWAQYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGIWKECPHGGGPIQFPGFNGELICPAYHELCHTDPVSGSGQCPNSCNFNGDCVDGRCHCFLGFHGHDCSRRSCPSNCNGNGICLSNGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNTSMLLSSLSVCKNVLGNDVSGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCDKDGDNRLRVCHSACQSYNVACGASLDCSDQTLFSSEGEGEGQCTGSGEMKLSWFNRLRSSFSLRNSSLKGISVRYRQL. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00582 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 248 277 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Seca4g00582 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 401 430 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Seca4g00582 860 FunFam SD03917p 596 638 - -
Seca4g00582 860 ProSitePatterns EGF-like domain signature 2. 655 666 IPR000742 -
Seca4g00582 860 Gene3D Leishmanolysin domain 4 502 597 - -
Seca4g00582 860 Gene3D - 112 303 - -
Seca4g00582 860 ProSitePatterns EGF-like domain signature 1. 655 666 IPR000742 -
Seca4g00582 860 FunFam Peptidase M8, leishmanolysin 113 303 - -
Seca4g00582 860 FunFam leishmanolysin-like isoform X2 502 597 - -
Seca4g00582 860 Gene3D Leishmanolysin , domain 2 313 438 - -
Seca4g00582 860 Gene3D Laminin 607 636 - -
Seca4g00582 860 Gene3D Laminin 638 669 - -
Seca4g00582 860 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 58 819 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Seca4g00582 860 SMART egf_5 596 635 IPR000742 -
Seca4g00582 860 SMART egf_5 638 667 IPR000742 -
Seca4g00582 860 Pfam Leishmanolysin 174 599 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Seca4g00582 860 FunFam Teneurin transmembrane protein 2 607 637 - -
Seca4g00582 860 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 117 601 - -
Seca4g00582 860 FunFam leishmanolysin-like peptidase isoform X2 441 500 - -
Seca4g00582 860 Gene3D Leishmanolysin domain 3 442 500 - -
Seca4g00582 860 ProSiteProfiles EGF-like domain profile. 635 667 IPR000742 -
Seca4g00582 860 FunFam leishmanolysin-like peptidase isoform X2 314 438 - -
Seca4g00582 860 Pfam EGF-like domain 639 666 IPR013111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00582 Seca-Chr4 9533748 9541835 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00582 4 9533748 9541835 Seca4g00582 4 9533748 9541835 ECH
Seca4g00582 4 9533748 9541835 Seca4g00582 4 9533748 9541835 PCT