Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00563 ATGGAAAACCATGTGATCTCAACTCCACCATATGTCAATCGCTCAGAGATTCTCAAGACATCTGGAAATGGAGAGGATGTGCATGACAGCCATAAGGGAAAGGATGTCTTTAGGCCATCCATGCTCGACTCTGAAAGTGGACGTCGTGATCGTTGGCGTGATGAAGAGAGAGACACCAAGTCCTCCATACGCAAGGATCGTTGGAGGGATGGAGACAAAGACCTCGGTGATGCTCGGAAAGTGGACCGATGGACAGAAAACCCATCCATGAGGCACTTTGGAGAAACACGTCGTGGTACACCTGATAGATGGAATGATTCCAGTAATAGAGAAATGAACTTTGATCAGCGGCGTGAGAGTAAGTGGAATACACGTTGGGGTCCTGATGATAAGGAGCCAGAAGTTCTCCGTGAAAAATTGAATGACTCTGGTAAAAATGGTGATCTGCACCTGGACAAAGGTTTGTCTCACATTTCCAATCCTGGTAAGGATGAAAAGGAAGGGGATCATTATCGGCCATGGAGATCTAACTCCTCACTAAGCCGTGGAAGGGTAGAGACTGCCCATCACCAGAATGTTACCCCAAACAAACAAGTGCCTACATTTTCTTCTGGGCGGGGCCGTGGGGAGGATACACCTCCAGTCATTACTCTTGGACGTGCTCGACATGCCTCTGGTGGTAGCCCTATAAATAGCACATACATGCATTCCCAATCCCCTGGAACTGTATTGGATATAGGTGAAAATGAGCATGGAGAAGCCCGACACTTTAGATATAGTAGGACTAACATGTTCGATGTGTACAGAGTGACTGATGTGCATACAGATAGAAAACTAGTGGATGATTTTGTGCAAGTACCTTCTCTTACACAGGATGAACCATTGGAGCCTCTAGCTCTTTGTGCACCAAATTTTGAGGAACTGTCTGTCTTAAAGGGTATTGACAAAGGGGACATAATTAGTAGCAGTGCACCTCAGATGCCAAAAGATGGACGGATCTCAACAGACTTCACACATTCAAGACGAATGAAGCTTGGAAATGCACCTCTGCAAGATAGAGGTGAGGATGGAGGTTCTTACAGAGTGGCTGATGAGGTGCCTAGTAATAGAGAACCAACCTTTGAAGAAAATAATTCTGTTCGTCCTGGTGCTGCATGGCATGTCACACCACTGGGTGAACATGCAAGCACTCTCATGCATGATAGCAGAGATGTGTCTAGTGATGTCAGACCAAGAAGCTCTGATATGAGTTGGTCTCACCAGCCAAAAGATCCTCATACTCAGTGGGAGAATAATTTGGACTATTTATCTGACACCAGAGATGTGGCTAAATGGCAATCTAGTGAAGATCCTATTGTTAAGAGGCAACTAACTGGCATTTTGGACAGTGAACTTGAAACAAGGAGAGTTCCTCAGACTTCTCCAGAGGAGTTATCCCTTTTCTATAAAGATCCTCAGGGTCGAGTTCAGGGCCCGTTCAAAGGAATTGATATTATTGGATGGTTTGAGGCTGGATATTTTGGTATTGATTTACCAGTTCGTCTGGAAAGTGCAGCAGCTGACTCACCATGGTTTCAACTTGGTGATGCCATGCCCCATTTACGAGCTAAAGCCCGACCACCACCTGGGTTTTCTGCAACGAAACTTGACTCTACTGAGGCACTTGATCGGCAAAATTCCAGTACCTTTGGGAACATCCATGCTGGTTTGAGTGAGGTTGAGATGTTGAGAAATAACTCTATGCATAGACAAAGTTCTACTACAGAAGCTGAAAATAGGTTTTTGGAGTCACTCATGTCTGGTAGCAAGAACATTTCCCCACTTGAAAGTCTGACATTATCAGAAGGTTTACAAGGGTTTATTGGAAATAATTCTGGTAATTTGGGCCCATCAGGAGTGGATGTTGGAAATGACCCTTACTTGCTGGCCAAAAGGATGGCACTTGAACGACAGAGGTCCTTACCCAATCCTTATCCGTATTGGCCAGGGATAGATGCAGCATCCCTTCCGCCAAAATCAGACATTGTTCCAGATGCATCACCACATTCAAAACTCTTGTCTTCATTGAGTGACAATTCTCGTCAGTTCCAGCCCCAAAATTCTGATTTGATCTCAATCATCCAGGGATTATCTGACAGGGCATCCACAGGCTTAAATAATAACGTTGCTGGATGGACAAATTATCCCTTACAAGGTGGGTTGACTCCCCTGCAGAATAAGATTGACATGCATCATGATCAGAATTTTCTTCAAATACCATTTGGAATTCAACAACAGAGGTTGCAAACACCAAACCAATTGTCTTTAAATAACTTAATGGCTCAAACTGCAGACAACCCATCTAGTATTTTGGCAGCAGAGAAGTTACTTTCTTCTGGTTTATCCCAAGATCCTCAAATAGCAAATATGTTGCAACAGCAATACTTGCTGCAGTTGCATTCTCAGGCAACTGCTCCTGCACAGCAGATGCCTTTGTTAGATAAACTTCTATTGCTGAAGCAGCAACAACAGCAGGAGGAGCAACAGCTGTTACTGTGCCAACAACAGCAACTGCTTTCTCAAGTGCTGCAGGAGCATCAGTCTCACCAGCGCTTTGGGGATTTATCTTATGGACAGTTACAGGGAGGTGGAATACCAATGGAGAATTTGCATGTGGATCCTTCTCAACTTCAACCACATCAAGAGATTTTTCCCATGAGCTCTCAGACACAAATTCCCCGTGTGCGTGATGAGCTTAGTACCAACTCCATGAATTTACCTCTACAAGTAAGCCAGGACACTAGGTATAATATAAGCAGCGAATCTTCTGTGCAGCTGCCTTGTGAATTGTTAGGGAATATTAGTCATCAGAAAAGCTGGGGCCCTGCCCCTACTCTCCCTGAGCAAATTAATGAAAACTACCAGAATGAAACATTGCCTGCATCAGCTTCTGTTGAACGCTCCCTATTGCATGAGCAGAACAGAACCAAAGAGGAACCCGAGATTATACAGAAACCTCTTTCTGTTTCTGACTGCACTGCTAAATCTGTGGAACAGATACCAGACGACAATTGTAGGGCTGATGGTACTTTTGTGAGTGCAATTTCTGACTCTGGTGAACATTCTCAACCTGTACAGTGTGTTGAACCCATTGTTGCTGTGACTTCAACTGGATCTTGTGGGACTGAGTTGCCACTAACAAGTCAACTGGGTAAGGATGTGGAGATTAAATCTGATAGTATTGAAGAGCAGCAGGCTGGAAGTGACAGCACAAATGTTGGGCCCTCTTTGGCGGATATAAGAAATGTTGAAGCACATGAACCCAAAAAGGCTACTGAGAAGAAATCTAAGAAGCAAAAATCTTCCAAAGCCCAGTCTTCTGATCAAGCAAAGGGATTGCTGAAAAATGTGACTTCACAGCAGTCAAAGAAGTCAGAAGCTGAAAAGCCAAATTATAGTGAAATCAATTTGAAGGAAGTCATCAACGGTGAAGCAGCTTATGAAACATATCTTACACAAACTAGAGGTAAGGGCAGTCAATCTGGGATTGCTACCACTGAGGCAGCTGATCATCAAGAAGTCAGTGGACTCTCTGCTAACATTCCAGGAAGCATCACTGAAACAGTTGTTGAGAGTGACTCGAAGGCAGTCAGTTCTGTTGGCACACAGGATACTGAATTACCATCAGGGAGAGCTTGGAAACCTGCTCCTGGTTTCAAAGCAAAATCTTTATTAGAAATTCAACAGGAAGAACAAAAAAAGGCACGGACAGAGATGCATGTAGCCGATGTTGCTACTTCCATCAATTCCTTGAGTTTGGCAACTCCCTGGGTTGGAATTGTAGCGAATCCAGACTCTACAAAGGTGTCTAGTGAAAGTCACAGAGAAGCAGGCAATGCTGAACATCTGGCTAAACCCAAAACTACTCAAAATAGCAAGAGCAAGAAAAGCCCATTACATGATCTATTGGCGGAAGATGTAAAAAAATCAAGTGAAAGAGATGGAAAGGTTCCAGACATTATGCTGTCTTCACAAGATATAGCTGTCCAATCAGAAACAATAGATGATGGGAGCTTTATTGAAGCTAAAGACACTAAAAGAAGCCGAAAAAAATCCTCAAAATCAAAGGGCTCAGGGTCTAAGGCCTCAGTGCCAGTTGCTTCTAGTGAAGTGCCCATAAGTTCAAGTCCCATTGAAAAGGGAAAAAGCTCCCGCACTTTACAGCAGGAGAAAGAACAACTGCCTACTATCCCTTCAGGACCCTCTCTGGGAGATTTTGTTCTTTGGAAAGGAGAGTCAAAAAGCCCATCTCCTTCTCCAGCATGGACTACTGATTCTGGTAGGGTTCCTAAACCGATGTCATTAAGGGACATTTTAAAGGAGCAGGAGAAAAAGTCAACTTCTACAGCTCCCTCAAACTCATTGTCTGCCCCTCAGAAATTACAGCCTGCCCAATCTGCTCGGAGTAGTGGTCCTTCATGGACAATTTCAGCTTCATCTCCATCGAAAGCTGCACCTTCTAGCCAGATGAACAACCAAGCCTCTCAGTCGAAATACAAAGGGGATGATGACTTGTTCTGGGGTCCAATTGAGCAATCCAAGCTAGAAACTAAGCAGTCAGATTTCCCTCAGCTTGCAAGCCAGGGAAGCTGGGGTTCCAAAAATGTTCCCGTGAAAGGTAATTCACCTGGACAATTAAGTCGACAAAAATCAGGGAGTAGCAAACCGACGGAGCGGTCTCTATCATCATCACCTGCCTCTTCTCAATCATTGCTGAAATTGAAGAAAGATGCCATGACTAAGAATTCTGAAGCCATGGACTTCAGAGTTTGGTGTGAAAATGAATGTGTCAGGCTTATTGGGACGAAAGATACAAGTTTCCTTGAATTTTGCTTGAAGCAATCCAGATCTGAAGCAGAGGTGTTTCTGATAGAAAACCTTGGATCATATGACCCTGACCATGAATTCATTGATAAATTCCTCAATTACATGGAGTTACTACCGTCAGATGTTTTGGAAATAGCTTTTCAGACTCCGAATGATTGGAAAGTTGCTGGTGGTATGATATCTGGAAATACAGATTTACAGGATCTGGGACAGACTGAAGGATTCTCCTCAAAAGGTGGAAAGAAGAAGGGTAAGAAAGGGAAAAAGGTTAGCGCTTCAGTTTTGGGATTTCAAGTCGTAAGTAACCGGATCATGATGGGTGAGATCCAGACAGTAGAAGACTAA 5211 0.4385 MENHVISTPPYVNRSEILKTSGNGEDVHDSHKGKDVFRPSMLDSESGRRDRWRDEERDTKSSIRKDRWRDGDKDLGDARKVDRWTENPSMRHFGETRRGTPDRWNDSSNREMNFDQRRESKWNTRWGPDDKEPEVLREKLNDSGKNGDLHLDKGLSHISNPGKDEKEGDHYRPWRSNSSLSRGRVETAHHQNVTPNKQVPTFSSGRGRGEDTPPVITLGRARHASGGSPINSTYMHSQSPGTVLDIGENEHGEARHFRYSRTNMFDVYRVTDVHTDRKLVDDFVQVPSLTQDEPLEPLALCAPNFEELSVLKGIDKGDIISSSAPQMPKDGRISTDFTHSRRMKLGNAPLQDRGEDGGSYRVADEVPSNREPTFEENNSVRPGAAWHVTPLGEHASTLMHDSRDVSSDVRPRSSDMSWSHQPKDPHTQWENNLDYLSDTRDVAKWQSSEDPIVKRQLTGILDSELETRRVPQTSPEELSLFYKDPQGRVQGPFKGIDIIGWFEAGYFGIDLPVRLESAAADSPWFQLGDAMPHLRAKARPPPGFSATKLDSTEALDRQNSSTFGNIHAGLSEVEMLRNNSMHRQSSTTEAENRFLESLMSGSKNISPLESLTLSEGLQGFIGNNSGNLGPSGVDVGNDPYLLAKRMALERQRSLPNPYPYWPGIDAASLPPKSDIVPDASPHSKLLSSLSDNSRQFQPQNSDLISIIQGLSDRASTGLNNNVAGWTNYPLQGGLTPLQNKIDMHHDQNFLQIPFGIQQQRLQTPNQLSLNNLMAQTADNPSSILAAEKLLSSGLSQDPQIANMLQQQYLLQLHSQATAPAQQMPLLDKLLLLKQQQQQEEQQLLLCQQQQLLSQVLQEHQSHQRFGDLSYGQLQGGGIPMENLHVDPSQLQPHQEIFPMSSQTQIPRVRDELSTNSMNLPLQVSQDTRYNISSESSVQLPCELLGNISHQKSWGPAPTLPEQINENYQNETLPASASVERSLLHEQNRTKEEPEIIQKPLSVSDCTAKSVEQIPDDNCRADGTFVSAISDSGEHSQPVQCVEPIVAVTSTGSCGTELPLTSQLGKDVEIKSDSIEEQQAGSDSTNVGPSLADIRNVEAHEPKKATEKKSKKQKSSKAQSSDQAKGLLKNVTSQQSKKSEAEKPNYSEINLKEVINGEAAYETYLTQTRGKGSQSGIATTEAADHQEVSGLSANIPGSITETVVESDSKAVSSVGTQDTELPSGRAWKPAPGFKAKSLLEIQQEEQKKARTEMHVADVATSINSLSLATPWVGIVANPDSTKVSSESHREAGNAEHLAKPKTTQNSKSKKSPLHDLLAEDVKKSSERDGKVPDIMLSSQDIAVQSETIDDGSFIEAKDTKRSRKKSSKSKGSGSKASVPVASSEVPISSSPIEKGKSSRTLQQEKEQLPTIPSGPSLGDFVLWKGESKSPSPSPAWTTDSGRVPKPMSLRDILKEQEKKSTSTAPSNSLSAPQKLQPAQSARSSGPSWTISASSPSKAAPSSQMNNQASQSKYKGDDDLFWGPIEQSKLETKQSDFPQLASQGSWGSKNVPVKGNSPGQLSRQKSGSSKPTERSLSSSPASSQSLLKLKKDAMTKNSEAMDFRVWCENECVRLIGTKDTSFLEFCLKQSRSEAEVFLIENLGSYDPDHEFIDKFLNYMELLPSDVLEIAFQTPNDWKVAGGMISGNTDLQDLGQTEGFSSKGGKKKGKKGKKVSASVLGFQVVSNRIMMGEIQTVED. 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1311 1329 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 321 378 - -
Seca4g00563 1736 Gene3D - 465 553 IPR035445 -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 411 425 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1076 1090 - -
Seca4g00563 1736 Pfam GYF domain 481 518 IPR003169 GO:0005515
Seca4g00563 1736 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1736 - -
Seca4g00563 1736 SMART gyf_5 478 533 IPR003169 GO:0005515
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1170 1219 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 395 425 - -
Seca4g00563 1736 CDD GYF 477 534 IPR003169 GO:0005515
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1370 1409 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 21 173 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1170 1228 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1118 1139 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1526 1583 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1074 1144 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1276 1583 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1458 1512 - -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 174 205 - -
Seca4g00563 1736 ProSiteProfiles GYF domain profile. 477 528 IPR003169 GO:0005515
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1 213 - -
Seca4g00563 1736 SUPERFAMILY GYF domain 469 534 IPR035445 -
Seca4g00563 1736 MobiDBLite consensus disorder prediction 1095 1117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00563 Seca-Chr4 9140815 9150018 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00563 4 9140815 9150018 Seca4g00563 4 9140815 9150018 ECH
Seca4g00563 4 9140815 9150018 Seca4g00563 4 9140815 9150018 PCT