Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00530 ATGGATTCAACTTGTGCAACCCTGAGTACCAATCTTGTTAATGTCAATAAAGGAATTGGAACAAACAGAAGAAGTGGGTTTTTGGGTGAGAATACAAGGGGAAGTCTGAACACAGGGTTTTTGAGTATTCAATCATGCAAGGCTTCAAAAACTTGTATCAATCTTAGAACCATCAAGCCAAGAACTGGAATTGCATACGCTGTTCTCACATCAGACATCAACGAAGAAGAGTCCACGGCATTCCAGGAGGTTCCTACTTTTGAGACTCCAAAAGCAGATCCAAAAAGTGTGGCTTCAATCATATTGGGTGGAGGTGCTGGAACTCGCTTATTTCCTCTTACTAGCAGAAGAGCCAAGCCCGCGGTTCCAATTGGAGGGTGTTACAGACTCATAGATATTCCGATGAGCAATTGCATCAACAGTGGCATCAAAAAAATATTCATTTTAACACAATTCAACTCTTTCTCCCTCAACCGCCACCTGTCCCGCACGTACCATTTTGGAAATGGCATGACTTTTGGAGATGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACACCTGGAGAGACAGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTCTACCGGATGGACTATATGGACTTTGTACAGAAACACATTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGCCGTGCATCAGACTATGGGCTGATGAAAATTGATAAAACAGGAAGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTGAAGGCAATGCGTGTTGACACCACTCTCCTCGGGTTATCTCCAGAAGAAGCAAAGAAACATCCTTATATTGCATCCATGGGTGTCTACGTGTTTAGAACTGAGACCCTGCTGAAACTATTAAGATGGAGCTGTTCTTCATGCAATGATTTTGGTTCTGAAATCATCCCATCTGCTGTGAGCGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTGTAAAGTCCTTCTTTGATGCAAATCTGGCCCTGACAGAACATCCTCCAAAATTTGAATTCTATGATCCAATGACACCTTTCTACACTTCCCCAAGATTCCTACCACCAACTAAAGTAGAAAAATGCAAGATCGTGGACGCAATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGTGTTCAGCATTCTATTGTTGGAGTACGCTCGCGTTTAGAGTCTGGCGTGGAGCTTCAGGACACAATGATGATGGGTGCTGACTACTATCAAACTGAACCTGAAATTACATCTCTGCGAGCAGAAGGAAAGGTTCCAATTGGTGTTGGAGAAAATACCAAAATCAGGAATTGTATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATTATTGCAAATGCTGATGGTGTCCAAGAAGCTGACAAAACTAAGGAAGGATTCTACATTAGGTCGGGCATCACAATTATATTGAAGAATGCAACAATTAAAGATGGAACAGTTATATGA 1593 0.4181 MDSTCATLSTNLVNVNKGIGTNRRSGFLGENTRGSLNTGFLSIQSCKASKTCINLRTIKPRTGIAYAVLTSDINEEESTAFQEVPTFETPKADPKSVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDIPMSNCINSGIKKIFILTQFNSFSLNRHLSRTYHFGNGMTFGDGFVEVLAATQTPGETGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQKHIDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLSPEEAKKHPYIASMGVYVFRTETLLKLLRWSCSSCNDFGSEIIPSAVSEHNVQAYLFNDYWEDIGTVKSFFDANLALTEHPPKFEFYDPMTPFYTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELQDTMMMGADYYQTEPEITSLRAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANADGVQEADKTKEGFYIRSGITIILKNATIKDGTVI. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00530 530 Pfam Nucleotidyl transferase 99 376 IPR005835 GO:0009058
Seca4g00530 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Seca4g00530 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 60 530 IPR011831 GO:0005978|GO:0008878
Seca4g00530 530 CDD LbH_G1P_AT_C 398 524 - -
Seca4g00530 530 Gene3D Hexapeptide repeat proteins 396 530 - -
Seca4g00530 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 194 202 IPR005836 GO:0005978|GO:0008878
Seca4g00530 530 FunFam Glucose-1-phosphate adenylyltransferase 79 395 - -
Seca4g00530 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 395 IPR029044 -
Seca4g00530 530 NCBIfam glucose-1-phosphate adenylyltransferase 98 494 IPR011831 GO:0005978|GO:0008878
Seca4g00530 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 491 IPR029044 -
Seca4g00530 530 FunFam Glucose-1-phosphate adenylyltransferase 396 530 - -
Seca4g00530 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 103 122 IPR005836 GO:0005978|GO:0008878
Seca4g00530 530 CDD ADP_Glucose_PP 100 361 - -
Seca4g00530 530 SUPERFAMILY Trimeric LpxA-like enzymes 392 530 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00530 Seca-Chr4 8762572 8769912 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00530 4 8762572 8769912 Seca4g00530 4 8762572 8769912 ECH
Seca4g00530 4 8762572 8769912 Seca4g00530 4 8762572 8769912 PCT