Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00512 ATGTATCCCGACCAAGCCTTTTCTTCAGGGTCCTATGCGGAGATGTTGTCCCGGAATCACCTATTACCTCATAACTACAATGAATCTGTTGGAGGACAAAATGAGGCAAAGTTTATCGCTGCTATGGGTGACACAGTGACTATGCAGTCTATTGAAGGGCATTCCAATGCTGCAACTGGTGATCCAGCATGCAACTCCCATGTTAGTGAGCAAAATATACAGTGCCAGGGTTTATCTCTTAGTCTTGGGACACTAATGCCTTCTACTGCATCTGTCCCTCAGTTTCAATACCAGTATTCAGACACTGGTCTCTTACCTTTAATGACTTCTTGTCTCCCAAACTTAAAAGGAACTATATCTTTCAAAGATGATGAGGCCAACCTACATAAGGAGTTGAGAAGTTCTGAATGCATGGCATCTGTATCTTCTGGAGGTTTTTACAACCCTCACCCTTCTGATCCATGCTTGCAAGGATCACCAGGTTTTTCAAACATTGTCCTGAACTCCAGATACCTTAAGGCCTCACAGGAGTTACTTGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAACATGAGAAACAAGAAAAACTCCGTGACATTGGATTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATATCTTCAGGCCCTAATGGTTCTACCACAAATCCTTCTTGTGAACTATCACCTGTAGAACGACAGAATTTGCTGGATAAGAAGACAAAGCTCTTGGCGATGTTGGATGAGGTAGATAAAAGATATAGACAATACTGCCATCAGATGCAGATTGTGGTATCATCCTTTGATATGGTAGCTGGGTGTGGAGCAGCAGAACCATATACCACACTTGCTCTGAGAACAATTTCACGCCACTTTCGCTGTTTGCGTGATGCTATCAGTGGCCAAATTCAAGTGACACAAAGGAGCCTTGGGGAACAAGAGGGAATACCACGTCTCCGCTATGTGGATCAACAGCTTAGACAACAAAAGGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGGCCTCAAAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAGCATTTTCTTCATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCAAGGCAAACTGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATCAATGCACGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATATATAAAGAAGAGTTTGGTGATTCGTGCAATCTTTCATCTGAAAATACACTGAAAGACAAAAGAGATGATGTTCAAGAGTCTGATAATAAATGGGAAGATTCACAGGACAATTTAGTCACTGTTGATAGTGTCCAACATGGGTTGAAGTCGGAACATGTCTCTTCCACAACAGAACTAGAAAGAGGGGTCCATGGAGAAAATGTAATGGATTCTGGAACTTGGAAATTGCAGGGTAACCAAAGGTTTAGCATGAACAATAACAATAATAGCATTTATTCAAATGGTGATGGCACCCAAATGGATTCTACTCCTGCCACATATGATATATCAGAGTTGGGTAACCTTACAATGGGTGGCCACGTTTCACTTGCATTGGAGTTGAGGAACTGTGAAAGCGATGGGTTTGCCATGTCCAACGATGATGATGCCATTCATAAAAGACGTAATCAGACATTGGCTTCTTCCCCAGAGACTGATTTGTTAGATTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCTCATCTGTTGCATGAGTTTGTCGTATAA 1803 0.4248 MYPDQAFSSGSYAEMLSRNHLLPHNYNESVGGQNEAKFIAAMGDTVTMQSIEGHSNAATGDPACNSHVSEQNIQCQGLSLSLGTLMPSTASVPQFQYQYSDTGLLPLMTSCLPNLKGTISFKDDEANLHKELRSSECMASVSSGGFYNPHPSDPCLQGSPGFSNIVLNSRYLKASQELLDEIVNVRKALKQHEKQEKLRDIGLDGSKDSDGKSTSQSMQISSGPNGSTTNPSCELSPVERQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSCNLSSENTLKDKRDDVQESDNKWEDSQDNLVTVDSVQHGLKSEHVSSTTELERGVHGENVMDSGTWKLQGNQRFSMNNNNNSIYSNGDGTQMDSTPATYDISELGNLTMGGHVSLALELRNCESDGFAMSNDDDAIHKRRNQTLASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00512 600 MobiDBLite consensus disorder prediction 194 235 - -
Seca4g00512 600 SMART prehox3 160 308 IPR006563 -
Seca4g00512 600 Gene3D - 346 424 - -
Seca4g00512 600 Pfam Associated with HOX 166 307 IPR006563 -
Seca4g00512 600 Coils Coil 175 195 - -
Seca4g00512 600 MobiDBLite consensus disorder prediction 425 447 - -
Seca4g00512 600 MobiDBLite consensus disorder prediction 428 447 - -
Seca4g00512 600 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 437 - -
Seca4g00512 600 SMART HOX_1 349 413 IPR001356 GO:0003677
Seca4g00512 600 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Seca4g00512 600 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Seca4g00512 600 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Seca4g00512 600 CDD homeodomain 349 410 IPR001356 GO:0003677
Seca4g00512 600 MobiDBLite consensus disorder prediction 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00512 Seca-Chr4 8328279 8331200 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g00512 POX 2.5e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00512 4 8328279 8331200 Seca4g00512 4 8328279 8331200 ECH